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    14 repositories

    • plasmodiumdrugres

      Public
      Nextflow
      •
      MIT License
      •0•2•5•2•Updated Mar 12, 2026Mar 12, 2026

    • PGEcore

      Public
      Core set of scripts to perform common downstream analysis functionalities for Plasmodium. Includes wrappers of tools and bespoke code to perform common tasks.
      R
      •0•3•16•0•Updated Mar 8, 2026Mar 8, 2026

    • pmotool-app-web

      Public
      Web-based deployment of pmotools-app
      Python
      •0•1•0•0•Updated Mar 2, 2026Mar 2, 2026

    • snp.slicer

      Public
      R Package implementing the SNP-Slice algorithm
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 2, 2026Mar 2, 2026

    • recombuddy

      Public
      Simple simulator of Plasmodium falciparum genomic data that captures patterns of polyclonality and relatedness through recombination.
      R
      •
      Other
      •0•1•0•0•Updated Feb 16, 2026Feb 16, 2026

    • plasmogenepi-website

      Public
      TypeScript
      •0•0•0•0•Updated Dec 29, 2025Dec 29, 2025

    • PMO_Docs

      Public
      Documentation for Portable Microhaplotype Object Tools
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•1•1•0•Updated Dec 10, 2025Dec 10, 2025

    • pmotools-app

      Public
      A simple web app built with Streamlit that helps users convert their data into the PMO format using the `pmotools` package.
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Dec 10, 2025Dec 10, 2025

    • portable-microhaplotype-object

      Public
      A schema to define the minimum amount of data needed to export a microhaplotype calling pipeline analysis with associated metadata
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Nov 26, 2025Nov 26, 2025

    • pmotools-python

      Public
      Toolkit for working with Portable Microhaplotype Objects (PMOs)
      Python
      •
      GNU General Public License v3.0
      •0•2•4•1•Updated Nov 25, 2025Nov 25, 2025

    • malaria.em

      Public
      Code base for malaria.em v2.0 developed by Xiaohong Li
      R
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Aug 13, 2025Aug 13, 2025

    • plasmogenepi.r-universe.dev

      Public
      The PlasmoGenEpi R Universe
      0•0•0•0•Updated Aug 12, 2025Aug 12, 2025

    • plasmodiumtransmissionintensity

      Public
      Nextflow
      •
      MIT License
      •0•1•0•0•Updated Mar 25, 2025Mar 25, 2025

    • plasmodiumdrugres-wdl

      Public
      WDL
      •0•1•0•0•Updated Feb 7, 2025Feb 7, 2025