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    • Nextflow
      MIT License
      0252Updated Mar 12, 2026Mar 12, 2026
    • PGEcore

      Public
      Core set of scripts to perform common downstream analysis functionalities for Plasmodium. Includes wrappers of tools and bespoke code to perform common tasks.
      R
      03160Updated Mar 8, 2026Mar 8, 2026
    • Web-based deployment of pmotools-app
      Python
      0100Updated Mar 2, 2026Mar 2, 2026
    • R Package implementing the SNP-Slice algorithm
      R
      GNU General Public License v3.0
      0000Updated Mar 2, 2026Mar 2, 2026
    • Simple simulator of Plasmodium falciparum genomic data that captures patterns of polyclonality and relatedness through recombination.
      R
      Other
      0100Updated Feb 16, 2026Feb 16, 2026
    • TypeScript
      0000Updated Dec 29, 2025Dec 29, 2025
    • PMO_Docs

      Public
      Documentation for Portable Microhaplotype Object Tools
      Jupyter Notebook
      GNU General Public License v3.0
      0110Updated Dec 10, 2025Dec 10, 2025
    • A simple web app built with Streamlit that helps users convert their data into the PMO format using the `pmotools` package.
      Python
      GNU General Public License v3.0
      0100Updated Dec 10, 2025Dec 10, 2025
    • A schema to define the minimum amount of data needed to export a microhaplotype calling pipeline analysis with associated metadata
      Python
      GNU General Public License v3.0
      0100Updated Nov 26, 2025Nov 26, 2025
    • Toolkit for working with Portable Microhaplotype Objects (PMOs)
      Python
      GNU General Public License v3.0
      0241Updated Nov 25, 2025Nov 25, 2025
    • Code base for malaria.em v2.0 developed by Xiaohong Li
      R
      GNU General Public License v2.0
      0000Updated Aug 13, 2025Aug 13, 2025
    • The PlasmoGenEpi R Universe
      0000Updated Aug 12, 2025Aug 12, 2025
    • Nextflow
      MIT License
      0100Updated Mar 25, 2025Mar 25, 2025
    • WDL
      0100Updated Feb 7, 2025Feb 7, 2025