pmotools-app

This repository contains the code for an app built with Streamlit that helps users convert their data into the PMO format using the pmotools-python package.

Contents

• Features
• Requirements
• Setup
• Usage
• Developer Notes

Features

• Convert your data to PMO (in development)
  • Upload your data files (CSV, TXT, or XLSX)
  • Converts the data into PMO format using pmotools
  • Download the converted data as PMO

Requirements

• Python 3.11+
• uv (Python package and project manager)

Setup

1. Clone the repository:

   git clone https://github.com/PlasmoGenEpi/pmotools-python.git
   cd pmotools-app

2. Install uv and sync environment (if not already installed):

   pip install uv
   uv sync --dev

Usage

Run the Streamlit app with uv:

uv run streamlit run PMO_Builder.py

Developer Notes

• Install or update dependencies:
• Add: uv add <package>
• Remove: uv remove <package>
• Upgrade: uv lock --upgrade then uv sync
• Run pre-commit hooks (linting with ruff):

  uv run pre-commit run --all-files

• Install pre-commit hooks (run once):

  uv run pre-commit install