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@PlasmoGenEpi

PlasmoGenEpi

We are a network of scientists who have come together since 2018 to address challenges in malaria genomic epidemiology.

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  1. PGEcore PGEcore Public

    Core set of scripts to perform common downstream analysis functionalities for Plasmodium. Includes wrappers of tools and bespoke code to perform common tasks.

    R 3

  2. pmotools-python pmotools-python Public

    Toolkit for working with Portable Microhaplotype Objects (PMOs)

    Python 2

  3. plasmodiumdrugres plasmodiumdrugres Public

    Nextflow 2

  4. portable-microhaplotype-object portable-microhaplotype-object Public

    A schema to define the minimum amount of data needed to export a microhaplotype calling pipeline analysis with associated metadata

    Python 1

  5. PMO_Docs PMO_Docs Public

    Documentation for Portable Microhaplotype Object Tools

    Jupyter Notebook 1

  6. pmotools-app pmotools-app Public

    A simple web app built with Streamlit that helps users convert their data into the PMO format using the `pmotools` package.

    Python 1

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