Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.
`cazomevolve` ('cazome-evolve') investigates the evolution of CAZomes, and identifies CAZy families that co-occur within the genomes of candidate species, more frequently than would be expected by lineage.
Python package for the identification of comprehensive CAZyomes of candidate species
Bioinformatics work for the paper Foltanyi et al., 2022
Supplementary information on the exploration of the CAZome and carbohydrate processing enzyme activities in soft rot Pectobacteriaceae
Supplementary information for analyses reported in Hobbs et al. (2023), for presenting the software package `cazy_webscraper`
Pipeline for discovering secreted multidomain fungal CAZymes using SignalP 6, DeepTMHMM, dbCAN, CD-HIT and homology-based candidate prioritization.
In silico CAZyme profiling of the glycoproteome of B. longum. It maps the complex multidomain Glycoside Hydrolase (GH) architectures and syntenic gene clusters that drive host-secreted mucin foraging, recalcitrant glycan depolymerization, and symbiotic cross-feeding.
Comparative genomic profiling of Carbohydrate-Active Enzyme (CAZyme) repertoires and Polysaccharide Utilization Loci (PULs) delineating the complex glycan foraging capacities of intestinal Bacteroides xylanisolvens versus Escherichia coli K12.
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