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Bioinformatics

Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.

Here are 14,973 public repositories matching this topic...

Developer-Y / cs-video-courses

List of Computer Science courses with video lectures.

computer-science security machine-learning bioinformatics web-development reinforcement-learning computer-vision deep-learning algorithms robotics computational-biology databases embedded-systems systems computational-physics quantum-computing computer-architecture database-systems

Updated Jul 7, 2026

K-Dense-AI / scientific-agent-skills

Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 160,000+ scientists worldwide. 148 ready-to-use skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.

bioinformatics genomics computational-biology scientific-visualization scientific-computing drug-discovery data-analysis proteomics metabolomics chemoinformatics materials-science clinical-research claude ai-scientist agent-skills claudecode claude-skills

Updated Jul 15, 2026
Python

plotly / dash

Data Apps & Dashboards for Python. No JavaScript Required.

react python productivity flask finance data-science bioinformatics ai jupyter web-app plotly data-visualization dash dashboards gui-framework charting technical-computing plotly-dash

Updated Jul 15, 2026
Python

biopython / biopython

Official git repository for Biopython (originally converted from CVS)

python bioinformatics genomics protein-structure dna protein biopython phylogenetics sequence-alignment

Updated Jul 6, 2026
Python

danielecook / Awesome-Bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome bioinformatics awesome-list

Updated Apr 7, 2026

seandavi / awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

python bioinformatics clustering gene-expression data-visualization dimensionality-reduction awesome-list data-integration atac-seq single-cell rna-seq-data scrna-seq-data cell-differentiation gene-expression-profiles analysis-pipeline spatial-transcriptomics cell-populations rna-seq-experiments cell-clusters

Updated Jul 14, 2026

google / deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

science machine-learning bioinformatics deep-learning genomics genome tensorflow ngs sequencing dna deep-neural-network deepvariant

Updated Mar 19, 2026
Python

nextflow

nextflow-io / nextflow

A DSL for data-driven computational pipelines

docker groovy hello aws cloud bioinformatics pipeline nextflow hpc reproducible-research workflow-engine slurm pipeline-framework sge singularity reproducible-science dataflow singularity-containers

Updated Jul 16, 2026
Groovy

ColabFold

sokrypton / ColabFold

Making Protein folding accessible to all!

bioinformatics protein-structure structure-prediction multiple-sequence-alignment

Updated Jul 14, 2026
Jupyter Notebook

scanpy

scverse / scanpy

Single-cell analysis in Python. Scales to >100M cells.

python data-science machine-learning bioinformatics transcriptomics visualize-data scanpy anndata scverse

Updated Jul 15, 2026
Python

OpenGene / fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

adapter quality bioinformatics quality-control filter ngs sequencing overlap splitting duplication umi trimming preprocessing filtering illumina fastq merging qc polyg

Updated Jul 10, 2026
C++

lh3 / minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

bioinformatics genomics sequence-alignment spliced-alignment

Updated May 19, 2026
C

MMseqs2

soedinglab / MMseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

bioinformatics taxonomy metagenomics alignment sequence-clustering profile-search sequence-search linclust mmseqs blast

Updated Jul 11, 2026
C

broadinstitute / gatk

Official code repository for GATK versions 4 and up

science bioinformatics spark genomics genome ngs sequencing dna gatk

Updated Jul 14, 2026
Java

scispacy

allenai / scispacy

A full spaCy pipeline and models for scientific/biomedical documents.

nlp bioinformatics spacy biomedical custom-pipes scientific-documents

Updated Dec 4, 2025
Python

bioconda / bioconda-recipes

Conda recipes for the bioconda channel.

bioinformatics conda hacktoberfest package-management

Updated Jul 16, 2026
Shell

galaxyproject / galaxy

Data intensive science for everyone.

science workflow bioinformatics pipeline genomics workflow-engine ngs sequencing dna usegalaxy hacktoberfest

Updated Jul 16, 2026
Python

ai4s-research / awesome-ai-for-science

A curated list of awesome AI tools, libraries, papers, datasets, and frameworks that accelerate scientific discovery — from physics and chemistry to biology, materials, and beyond.

awesome bioinformatics awesome-list scientific-ai ai4science ai-for-science ai4s

Updated Jul 16, 2026

lh3 / bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

bioinformatics genomics sequence-alignment fm-index

Updated Jun 20, 2026
C

shenwei356 / seqkit

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

golang bioinformatics cross-platform tool toolkit fasta manipulation sequence fastq

Updated Jul 8, 2026
Go

Followers: 1.9k followers
Website: github.com/topics/bioinformatics
Wikipedia: Wikipedia

Related topics

genomics sequencing