v9.4.1

9.4.1 (2026-03-20)

Performance Improvements

• autobump bio/alignoth/environment.yaml (#5090) (c898493)
• autobump bio/bcftools/call/environment.yaml (#5097) (c948ece)
• autobump bio/bcftools/concat/environment.yaml (#5098) (3586af1)
• autobump bio/bcftools/filter/environment.yaml (#5091) (46dac75)
• autobump bio/bcftools/index/environment.yaml (#5127) (9a8f17a)
• autobump bio/bcftools/merge/environment.yaml (#5094) (a35a08a)
• autobump bio/bcftools/mpileup/environment.yaml (#5092) (327b780)
• autobump bio/bcftools/norm/environment.yaml (#5124) (da23986)
• autobump bio/bcftools/reheader/environment.yaml (#5104) (d62fbb7)
• autobump bio/bcftools/sort/environment.yaml (#5108) (8fb1da5)
• autobump bio/bcftools/stats/environment.yaml (#5123) (339ba27)
• autobump bio/bcftools/view/environment.yaml (#5117) (6978b53)
• autobump bio/bedtools/bamtobed/environment.yaml (#5113) (64bb0e3)
• autobump bio/bedtools/complement/environment.yaml (#5125) (450ac7a)
• autobump bio/bedtools/coveragebed/environment.yaml (#5112) (fefdf96)
• autobump bio/bedtools/genomecov/environment.yaml (#5114) (08d5d57)
• autobump bio/bedtools/intersect/environment.yaml (#5119) (0475001)
• autobump bio/bedtools/merge/environment.yaml (#5111) (9c43ae2)
• autobump bio/bedtools/slop/environment.yaml (#5118) (b646945)
• autobump bio/bedtools/sort/environment.yaml (#5121) (41efc19)
• autobump bio/bedtools/split/environment.yaml (#5102) (25cd299)
• autobump bio/bellerophon/environment.yaml (#5106) (063fc86)
• autobump bio/benchmark/chm-eval-sample/environment.yaml (#5109) (b52b308)
• autobump bio/bgzip/environment.yaml (#5096) (8b73075)
• autobump bio/bismark/bam2nuc/environment.yaml (#5126) (5af9c41)
• autobump bio/bismark/bismark_genome_preparation/environment.yaml (#5099) (86f023e)
• autobump bio/bismark/bismark_methylation_extractor/environment.yaml (#5115) (81d7a6a)
• autobump bio/bismark/bismark/environment.yaml (#5128) (1a831ba)
• autobump bio/bismark/bismark2bedGraph/environment.yaml (#5095) (d224152)
• autobump bio/bismark/bismark2report/environment.yaml (#5101) (1c70afc)
• autobump bio/bismark/bismark2summary/environment.yaml (#5107) (61804d6)
• autobump bio/bismark/deduplicate_bismark/environment.yaml (#5105) (223775f)
• autobump bio/bowtie2/align/environment.yaml (#5110) (783bd88)
• autobump bio/bwa-mem2/mem/environment.yaml (#5120) (787ae6a)
• autobump bio/bwa/mem/environment.yaml (#5100) (ef5f5e7)
• autobump bio/bwa/sampe/environment.yaml (#5103) (c431cf4)
• autobump bio/bwa/samse/environment.yaml (#5116) (4e267ad)
• autobump bio/bwa/samxe/environment.yaml (#5122) (6b83924)
• autobump bio/bwameth/memx/environment.yaml (#5093) (66466a1)
• autobump bio/cnvkit/export/environment.yaml (#5130) (b385cd2)
• autobump bio/delly/environment.yaml (#5132) (98dcead)
• autobump bio/dragmap/align/environment.yaml (#5131) (68ce26c)
• autobump bio/fastp/environment.yaml (#5134) (40a0fb8)
• autobump bio/freebayes/environment.yaml (#5135) (d77af33)
• autobump bio/gatk/applybqsr/environment.yaml (#5136) (b28bee7)
• autobump bio/hisat2/align/environment.yaml (#5138) (41a5ec7)
• autobump bio/homer/makeTagDirectory/environment.yaml (#5137) (c894dfd)
• autobump bio/lofreq/call/environment.yaml (#5140) (a33460c)
• autobump bio/lofreq/indelqual/environment.yaml (#5139) (791ce40)
• autobump bio/minimap2/aligner/environment.yaml (#5141) (795fddd)
• autobump bio/mofa2/training/environment.yaml (#5142) (6b64bfe)
• autobump bio/paladin/align/environment.yaml (#5146) (c226b5d)
• autobump bio/picard/markduplicates/environment.yaml (#5147) (4403d22)
• autobump bio/pretext/map/environment.yaml (#5145) (b8210af)
• autobump bio/prinseq-plus-plus/environment.yaml (#5143) (c285c3c)
• autobump bio/ptrimmer/environment.yaml (#5144) (0a01341)
• autobump bio/reference/ensembl-variation/environment.yaml (#5148) (6c9373c)
• autobump bio/salmon/index/environment.yaml (#5078) (16b5adb)
• autobump bio/samtools/calmd/environment.yaml (#5154) (9627e71)
• autobump bio/samtools/collate/environment.yaml (#5166) (8f0ab45)
• autobump bio/samtools/depth/environment.yaml (#5167) (b9558be)
• autobump bio/samtools/faidx/environment.yaml (#5163) (dc88967)
• autobump bio/samtools/fastx/environment.yaml (#5157) (db3604b)
• autobump bio/samtools/fixmate/environment.yaml (#5155) (45192e9)
• autobump bio/samtools/flagstat/environment.yaml (#5156) (b5d508a)
• autobump bio/samtools/idxstats/environment.yaml (#5151) (e4b187f)
• autobump bio/samtools/index/environment.yaml (#5149) (2bfd2c1)
• autobump bio/samtools/markdup/environment.yaml (#5152) (70aa29d)
• autobump bio/samtools/merge/environment.yaml (#5169) (fd81fa1)
• autobump bio/samtools/mpileup/environment.yaml (#5168) (495b456)
• autobump bio/samtools/sort/environment.yaml (#5150) (1398d76)
• autobump bio/samtools/stats/environment.yaml (#5162) (60ec3c4)
• autobump bio/samtools/view/environment.yaml (#5153) (396296a)
• autobump bio/seqkit/environment.yaml (#5160) (4f5a096)
• autobump bio/snpeff/annotate/environment.yaml (#5164) (1ab18af)
• autobump bio/snpeff/download/environment.yaml (#5158) (b347081)
• autobump bio/snpsift/annotate/environment.yaml (#5170) (b624cae)
• autobump bio/snpsift/dbnsfp/environment.yaml (#5161) (6b1ce9d)
• autobump bio/snpsift/genesets/environment.yaml (#5159) (0170111)
• autobump bio/snpsift/gwascat/environment.yaml (#5165) (2a1b308)
• autobump bio/tabix/index/environment.yaml (#5172) (3e83a4d)
• autobump bio/tabix/query/environment.yaml (#5171) (4f3610d)
• autobump bio/umis/bamtag/environment.yaml (#5174) (239fb7f)
• autobump bio/unicycler/environment.yaml (#5173) (a08753e)
• autobump bio/vg/giraffe/environment.yaml (#5175) (de756f7)
• autobump utils/cairosvg/environment.yaml (#5129) (8c664ea)
• autobump utils/datavzrd/environment.yaml (#5133) (c7b3937)