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Pull requests: snakemake/snakemake-wrappers
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fix(clustalo): quote input and output filenames
#5854
opened Sep 6, 2026 by
dnncha
Contributor
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chore(master): release 9.17.2
autorelease: pending
#5843
opened Sep 4, 2026 by
snakemake-bot
Contributor
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perf: autobump bio/salmon/quant/environment.yaml
bio/salmon/quant
#5839
opened Aug 28, 2026 by
snakedeploy-bot
Bot
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perf: autobump bio/gatk/baserecalibratorspark/environment.yaml
bio/gatk/baserecalibratorspark
#5837
opened Aug 28, 2026 by
snakedeploy-bot
Bot
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perf: autobump bio/gatk/markduplicatesspark/environment.yaml
bio/gatk/markduplicatesspark
#5836
opened Aug 28, 2026 by
snakedeploy-bot
Bot
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perf: autobump bio/gatk/printreadsspark/environment.yaml
bio/gatk/printreadsspark
#5835
opened Aug 28, 2026 by
snakedeploy-bot
Bot
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perf: autobump bio/gatk/applybqsrspark/environment.yaml
bio/gatk/applybqsrspark
#5834
opened Aug 28, 2026 by
snakedeploy-bot
Bot
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perf: autobump wrappers in meta/bio/gatk_mutect2_calling/meta_wrapper.smk
meta/bio/gatk_mutect2_calling
#5830
opened Aug 28, 2026 by
snakedeploy-bot
Bot
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perf: autobump wrappers in meta/bio/calc_consensus_reads/meta_wrapper.smk
meta/bio/calc_consensus_reads
#5829
opened Aug 28, 2026 by
snakedeploy-bot
Bot
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perf: autobump wrappers in meta/bio/bwa_mapping/meta_wrapper.smk
meta/bio/bwa_mapping
#5828
opened Aug 28, 2026 by
snakedeploy-bot
Bot
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perf: autobump wrappers in meta/bio/bowtie2_sambamba/meta_wrapper.smk
meta/bio/bowtie2_sambamba
#5743
opened Aug 7, 2026 by
snakedeploy-bot
Bot
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fix: fix mem spec in samtools/sort wrapper
#5732
opened Jul 30, 2026 by
johanneskoester
Contributor
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7 tasks done
perf: autobump wrappers in meta/bio/star_arriba/meta_wrapper.smk
meta/bio/star_arriba
#5591
opened Jul 24, 2026 by
snakedeploy-bot
Bot
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perf: autobump wrappers in meta/bio/dada2_se/meta_wrapper.smk
meta/bio/dada2_se
#5588
opened Jul 24, 2026 by
snakedeploy-bot
Bot
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perf: autobump wrappers in meta/bio/dada2_pe/meta_wrapper.smk
meta/bio/dada2_pe
#5587
opened Jul 24, 2026 by
snakedeploy-bot
Bot
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fix: Dropped index.tct/index.tdct from examples
#5544
opened Jul 15, 2026 by
niekwit
Contributor
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perf: autobump wrappers in meta/bio/varscan2_snpeff/meta_wrapper.smk
meta/bio/varscan2_snpeff
#5366
opened Jun 19, 2026 by
snakedeploy-bot
Bot
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fix!: Switch token to an input file
#5302
opened May 21, 2026 by
fgvieira
Collaborator
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7 tasks done
perf: autobump utils/nextflow/environment.yaml
utils/nextflow
#5275
opened May 1, 2026 by
snakedeploy-bot
Bot
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fix!: make star index output and star align input idx a multiext()
#5226
opened Apr 14, 2026 by
dlaehnemann
Member
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7 tasks done
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Updated in the last three days: updated:>2026-09-03.