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Update SARS-CoV-2 datasets [automated] #409

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31aaac4
Update SARS-CoV-2 datasets [automated]
nextstrain-bot Feb 16, 2026
12c9fc7
chore: rebuild [skip ci]
nextstrain-bot Feb 16, 2026
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4 changes: 4 additions & 0 deletions data/nextstrain/sars-cov-2/BA.2.86/CHANGELOG.md
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Original file line number Diff line number Diff line change
@@ -1,3 +1,7 @@
## Unreleased

Automated update

## 2026-01-06T14:59:32Z

- Include the 6 newly designated Nextstrain clades 25D (MC.10.2.1), 25E (PY.1), 25F (NW.1.2), 25G (XFC), 25H (XFJ), and 25I (BA.3.2). See <https://github.com/nextstrain/ncov/pull/1192> for details.
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2 changes: 1 addition & 1 deletion data/nextstrain/sars-cov-2/BA.2.86/tree.json
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4 changes: 4 additions & 0 deletions data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/CHANGELOG.md
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Original file line number Diff line number Diff line change
@@ -1,3 +1,7 @@
## Unreleased

Automated update

## 2026-01-06T14:59:32Z

- Include the 6 newly designated Nextstrain clades 25D (MC.10.2.1), 25E (PY.1), 25F (NW.1.2), 25G (XFC), 25H (XFJ), and 25I (BA.3.2). See <https://github.com/nextstrain/ncov/pull/1192> for details.
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2 changes: 1 addition & 1 deletion data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/tree.json
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4 changes: 4 additions & 0 deletions data/nextstrain/sars-cov-2/wuhan-hu-1/proteins/CHANGELOG.md
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Original file line number Diff line number Diff line change
@@ -1,3 +1,7 @@
## Unreleased

Automated update

## 2026-01-06T14:59:32Z

- Include the 6 newly designated Nextstrain clades 25D (MC.10.2.1), 25E (PY.1), 25F (NW.1.2), 25G (XFC), 25H (XFJ), and 25I (BA.3.2). See <https://github.com/nextstrain/ncov/pull/1192> for details.
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2 changes: 1 addition & 1 deletion data/nextstrain/sars-cov-2/wuhan-hu-1/proteins/tree.json
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48 changes: 33 additions & 15 deletions data_output/index.json
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Expand Up @@ -76,8 +76,8 @@
"capabilities": {
"clades": 59,
"customClades": {
"Nextclade_pango": 4731,
"partiallyAliased": 4731,
"Nextclade_pango": 4797,
"partiallyAliased": 4797,
"clade_nextstrain": 59,
"clade_who": 13,
"clade_display": 59
Expand All @@ -95,6 +95,13 @@
]
},
"versions": [
{
"tag": "unreleased",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
}
},
{
"updatedAt": "2026-01-06T14:59:32Z",
"tag": "2026-01-06--14-59-32Z",
Expand Down Expand Up @@ -273,8 +280,7 @@
}
],
"version": {
"updatedAt": "2026-01-06T14:59:32Z",
"tag": "2026-01-06--14-59-32Z",
"tag": "unreleased",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
Expand Down Expand Up @@ -2695,13 +2701,13 @@
"treeJson": "tree.json"
},
"capabilities": {
"clades": 59,
"clades": 41,
"customClades": {
"Nextclade_pango": 4731,
"partiallyAliased": 4731,
"clade_nextstrain": 59,
"Nextclade_pango": 2766,
"partiallyAliased": 2766,
"clade_nextstrain": 41,
"clade_who": 13,
"clade_display": 59
"clade_display": 41
},
"qc": [
"frameShifts",
Expand All @@ -2716,6 +2722,13 @@
]
},
"versions": [
{
"tag": "unreleased",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
}
},
{
"updatedAt": "2026-01-06T14:59:32Z",
"tag": "2026-01-06--14-59-32Z",
Expand Down Expand Up @@ -2870,8 +2883,7 @@
}
],
"version": {
"updatedAt": "2026-01-06T14:59:32Z",
"tag": "2026-01-06--14-59-32Z",
"tag": "unreleased",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
Expand Down Expand Up @@ -2921,8 +2933,8 @@
"capabilities": {
"clades": 36,
"customClades": {
"Nextclade_pango": 3995,
"partiallyAliased": 3995,
"Nextclade_pango": 4061,
"partiallyAliased": 4061,
"clade_nextstrain": 36,
"clade_who": 3,
"clade_display": 36
Expand All @@ -2941,6 +2953,13 @@
]
},
"versions": [
{
"tag": "unreleased",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
}
},
{
"updatedAt": "2026-01-06T14:59:32Z",
"tag": "2026-01-06--14-59-32Z",
Expand Down Expand Up @@ -3119,8 +3138,7 @@
}
],
"version": {
"updatedAt": "2026-01-06T14:59:32Z",
"tag": "2026-01-06--14-59-32Z",
"tag": "unreleased",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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