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Nextstrain

Real-time tracking of pathogen evolution

218 followers
https://nextstrain.org
@nextstrain
@nextstrain@mstdn.science

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ncov ncov Public

Nextstrain build for SARS-CoV-2

Python 1.4k 409
augur augur Public

Pipeline components for real-time phylodynamic analysis

Python 275 136
auspice auspice Public

Web app for visualizing pathogen evolution

JavaScript 305 168

Repositories

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All C Dockerfile Go HTML JavaScript Jupyter Notebook Makefile Nextflow Perl Python R Rust Shell TeX TypeScript WDL

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Showing 10 of 100 repositories

.github Public

nextstrain/.github’s past year of commit activity

Shell 9 11 11 1 Updated Feb 9, 2026
docker-base Public
Docker image build for nextstrain/base

nextstrain/docker-base’s past year of commit activity

Shell 12 7 7 2 Updated Feb 9, 2026
augur Public
Pipeline components for real-time phylodynamic analysis

nextstrain/augur’s past year of commit activity

Python 275 AGPL-3.0 136 233 (1 issue needs help) 39 Updated Feb 9, 2026
nextstrain.org Public
The Nextstrain website

nextstrain/nextstrain.org’s past year of commit activity

JavaScript 96 AGPL-3.0 53 74 13 Updated Feb 6, 2026
forecasts-flu Public
Seasonal influenza variant growth rates and frequency forecasts

nextstrain/forecasts-flu’s past year of commit activity

Python 1 MIT 0 9 2 Updated Feb 6, 2026
forecasts-viz Public

nextstrain/forecasts-viz’s past year of commit activity

JavaScript 2 0 6 5 Updated Feb 6, 2026
docs.nextstrain.org Public
Umbrella documentation project for Nextstrain

nextstrain/docs.nextstrain.org’s past year of commit activity

Python 18 13 25 5 Updated Feb 6, 2026
bioconda-recipes Public Forked from bioconda/bioconda-recipes
Fork for maintaining Nextstrain-related recipes and submitting PRs upstream.

nextstrain/bioconda-recipes’s past year of commit activity

Shell 0 3,758 3 0 Updated Feb 5, 2026
mpox Public
Nextstrain build for mpox virus

nextstrain/mpox’s past year of commit activity

Python 50 MIT 23 17 8 Updated Feb 5, 2026
seasonal-flu Public
Scripts. config, and snakefiles for seasonal-flu nextstrain builds

nextstrain/seasonal-flu’s past year of commit activity

Python 57 29 31 9 Updated Feb 5, 2026

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