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vg surject discards interchromosomal split-read evidence, making novel BND/translocation calling impossible from graph-aligned reads

Status: Open.

#4865 In vgteam/vg;

· Qaswara98 opened on Apr 1, 2026

Release vg v1.74.0

Status: Open.

#4859 In vgteam/vg;

· adamnovak opened on Mar 23, 2026

·  

v1.74.0

vg autoindex crash

Status: Open.

#4858 In vgteam/vg;

· xiucz opened on Mar 23, 2026

vg autoindex fails with the wrong error on compressed GFA

Status: Open.

#4856 In vgteam/vg;

· adamnovak opened on Mar 19, 2026

running vg index ran into a vg crashed error

Status: Open.

#4850 In vgteam/vg;

· eabebe-tech opened on Mar 11, 2026

vg surject doesn't produce multiple surjections to the same path from a single graph placement

Status: Open.

#4840 In vgteam/vg;

· Sagorikanag opened on Feb 25, 2026

vg autoindex should not chop nodes to be smaller than the documented maximum length of 1024 bp by default

Status: Open.

#4829 In vgteam/vg;

· Knight-JChev opened on Feb 13, 2026

Best approach to quantify large-scale structural variants (INV/DUP/TRA) from a Minigraph-Cactus pangenome

Status: Open.

#4827 In vgteam/vg;

· Sumit1331 opened on Feb 10, 2026

the difference between spliced pangenome graphs and pantranscriptomes

Status: Open.

#4814 In vgteam/vg;

· jwli-code opened on Jan 29, 2026

vg rna crash

Status: Open.

#4813 In vgteam/vg;

· ammorse opened on Jan 27, 2026

vg autoindex mpmap signal 6

Status: Open.

#4812 In vgteam/vg;

· zwoonavery opened on Jan 26, 2026

vg giraffe extremely slow on Illumina PE data unless rescue is disabled (-A none): clarification on trade-offs

Status: Open.

#4802 In vgteam/vg;

· Sumit1331 opened on Jan 18, 2026