Allowed process substitution as input#128
Open
scwatts wants to merge 1 commit intotseemann:masterfrom
scwatts:master
Open
Allowed process substitution as input#128scwatts wants to merge 1 commit intotseemann:masterfrom scwatts:master
scwatts wants to merge 1 commit intotseemann:masterfrom
scwatts:master
Conversation
When using a process substitution as input, an error is thrown:
$ prokka <(sed 's/^\(.\+\?\)_length.\+/\1/g' contigs.fasta)
'/dev/fd/63' is not a readable non-empty FASTA file
Changed input file test so that the input must be readable, not a directory, and either a socket or a pipe.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
When using a process substitution as input, an error is thrown:
Changed input file test so that the input must be readable, not a directory, and either a socket or a pipe.