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Pull requests: smith-chem-wisc/mzLib
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Anchor the protein termini so terminal modifications survive
#1257
opened Aug 31, 2026 by
trishorts
Contributor
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Report what an entrapment database actually contains
#1256
opened Aug 30, 2026 by
trishorts
Contributor
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Turn an entrapment sequence into a database entry
#1255
opened Aug 30, 2026 by
trishorts
Contributor
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Assemble an entrapment sequence from a target one
#1254
opened Aug 30, 2026 by
trishorts
Contributor
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Capture the last pipe-delimited field as the UniProt FASTA accession
#1251
opened Aug 30, 2026 by
acesnik
Collaborator
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Add deterministic, composition-preserving sequence permutation
#1250
opened Aug 30, 2026 by
trishorts
Contributor
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Add StcE as a protease in its own right, not only paired with trypsin
#1249
opened Aug 30, 2026 by
trishorts
Contributor
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Skip a Koina test when Koina fails to run the model, instead of failing it
#1247
opened Aug 29, 2026 by
trishorts
Contributor
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Include the byte-order mark in the indexed-mzML fileChecksum
#1246
opened Aug 29, 2026 by
acesnik
Collaborator
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Fix two wrong Unimod accessions in the shipped mod files
#1245
opened Aug 29, 2026 by
acesnik
Collaborator
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Cover the unambiguous gaps mutation testing found in Deconvolution
#1235
opened Aug 27, 2026 by
trishorts
Contributor
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Close the test gaps mutation testing found in Chemistry
#1233
opened Aug 27, 2026 by
trishorts
Contributor
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Carry precursor metadata through mgf, and trim mgf peaks by MS level
#1227
opened Aug 27, 2026 by
acesnik
Collaborator
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Validate that a sequence variation is a real change, and fix the Combinatorics spelling
#1222
opened Aug 27, 2026 by
acesnik
Collaborator
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Declare that PeptideWithSetModifications.Parent shadows the base
#1220
opened Aug 26, 2026 by
acesnik
Collaborator
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Fix Extremum's equality contract: recursion, GetHashCode, and a null check
#1219
opened Aug 26, 2026 by
acesnik
Collaborator
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Changed StdDev of RT Error Distribution for MBR
#1216
opened Aug 26, 2026 by
Alexander-Sol
Contributor
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Refuse a spectra extension the mzML adapter cannot write, instead of doubling it
#1204
opened Aug 25, 2026 by
trishorts
Contributor
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Drop the dead intersectsAppliedRegionIncompletely flag
#1203
opened Aug 25, 2026 by
trishorts
Contributor
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Make the proline suffix follow the community convention (|P was inverted)
#1186
opened Aug 20, 2026 by
trishorts
Contributor
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Skip malformed MGF lines instead of indexing past the end
#1184
opened Aug 20, 2026 by
acesnik
Collaborator
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Make PtmListLoader forward to ModificationLoader, and fix the two dissociation keys they disagreed on
#1182
opened Aug 19, 2026 by
acesnik
Collaborator
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Write schema-valid mzML ids and fix the mzIdentML 1.1.0 namespace
#1171
opened Aug 16, 2026 by
acesnik
Collaborator
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