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Bug: Variant gets normal_artifact Filter by Mutect2

bugSomething isn't workingSomething isn't working

Status: Open.

#16 In scholl-lab/apa-sequencing;

· berntpopp opened on Aug 1, 2024

Feature request: calculate corss-contamination

enhancementNew feature or requestNew feature or request

Status: Open.

#15 In scholl-lab/apa-sequencing;

· berntpopp opened on Aug 1, 2024

Bug: Plasmid contamination

bugSomething isn't workingSomething isn't working

enhancementNew feature or requestNew feature or request

Status: Open.

#14 In scholl-lab/apa-sequencing;

· berntpopp opened on Aug 1, 2024

Feature request: Add expression in adrenal gland to annotation

analysisAnaylsis to perform for the project.Anaylsis to perform for the project.

enhancementNew feature or requestNew feature or request

Status: Open.

#13 In scholl-lab/apa-sequencing;

· berntpopp opened on Jul 29, 2024

Refactor: transcribe the different TODOs into Issues

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#12 In scholl-lab/apa-sequencing;

· berntpopp opened on Jun 26, 2024

Documentation: Sample selection and preparation

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#11 In scholl-lab/apa-sequencing;

· berntpopp opened on May 30, 2024

Analysis: Create a general overview of the sequencing and analyses in the project

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#10 In scholl-lab/apa-sequencing;

· berntpopp opened on May 30, 2024

Consolidate sample overview

documentationImprovements or additions to documentationImprovements or additions to documentation

enhancementNew feature or requestNew feature or request

Status: Open.

#9 In scholl-lab/apa-sequencing;

· berntpopp opened on May 30, 2024

Restructure repository, update README files and documentation

documentationImprovements or additions to documentationImprovements or additions to documentation

enhancementNew feature or requestNew feature or request

Status: Open.

#6 In scholl-lab/apa-sequencing;

· berntpopp opened on Oct 30, 2023

Write CNV analysis script

enhancementNew feature or requestNew feature or request

Status: Open.

#5 In scholl-lab/apa-sequencing;

· berntpopp opened on Oct 30, 2023

Write QC script

enhancementNew feature or requestNew feature or request

Status: Open.

#4 In scholl-lab/apa-sequencing;

· berntpopp opened on Oct 30, 2023

Fix disk space problem in gatk_calculate_contamination.smk script

bugSomething isn't workingSomething isn't working

Status: Open.

#3 In scholl-lab/apa-sequencing;

· berntpopp opened on Oct 30, 2023