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@ucsc-cgp UCSC Computational Genomics Platform

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    Repositories list

    25 repositories

    • training-resources

      Public
      Training materials for staff and community members
      WDL
      •2•2•0•1•Updated Aug 7, 2026Aug 7, 2026

    • cloud-billing-report

      Public
      Generates a summary billing report for various UCSC-CGP cloud accounts.
      Python
      •4•4•14•1•Updated Feb 2, 2026Feb 2, 2026

    • gi-cloud-bill-analyzer

      Public
      0•0•0•0•Updated Oct 30, 2024Oct 30, 2024

    • sync-agile-boards

      Public
      Synchronize tickets between ZenHub and Jira
      jirazenhubticket-management
      jirazenhubticket-management
      Python
      •
      Apache License 2.0
      •1•1•0•4•Updated Dec 8, 2022Dec 8, 2022

    • awsauditor

      Public
      A tool for interrogating AWS billing data
      Python
      •0•0•0•1•Updated Jun 21, 2022Jun 21, 2022

    • cgp-cloud-policies

      Public
      Python
      •0•0•7•1•Updated May 27, 2022May 27, 2022

    • cgp-boardwalk

      Public archive
      The CGP's faceted portal
      CSS
      •
      Apache License 2.0
      •1•2•47•0•Updated Aug 6, 2019Aug 6, 2019

    • cgp-dashboard

      Public archive
      The Core's web dashboard including a faceted file browser
      CSS
      •
      Apache License 2.0
      •4•1•1•1•Updated Aug 6, 2019Aug 6, 2019

    • drs-serverless

      Public
      (Aspirationally DRS) Native GCP interface to the /file endpoints of the HCA data-store
      Python
      •0•1•0•0•Updated Apr 9, 2019Apr 9, 2019

    • team-boardwalk

      Public
      Team Boardwalk daily tasks
      Apache License 2.0
      •0•0•0•0•Updated Feb 21, 2019Feb 21, 2019

    • team-redwood

      Public
      These are process tickets for team-redwood
      Apache License 2.0
      •0•0•8•0•Updated Feb 21, 2019Feb 21, 2019

    • cgp-data-portal

      Public
      Static Content for CGP Data Portal
      Apache License 2.0
      •0•0•0•0•Updated Dec 7, 2018Dec 7, 2018

    • cgp-deployment

      Public archive
      The UCSC Genomics Institute's Computational Genomics Platform (CGP). This repo contains the Docker compose-based deployment process.
      Shell
      •4•0•7•1•Updated Dec 7, 2018Dec 7, 2018

    • cgp-dss-data-loader

      Public archive
      Simple data loader for CGP HCA Data Store
      Python
      •
      Apache License 2.0
      •2•2•5•0•Updated Nov 30, 2018Nov 30, 2018

    • bagit-firecloud-lambda

      Public archive
      Upload TOPMed metadata into a FireCloud workspace
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Nov 20, 2018Nov 20, 2018

    • cgp-data-store

      Public archive
      Design specs and prototypes for the HCA Data Storage System ("blue box")
      Python
      •
      Other
      •6•0•0•0•Updated Nov 19, 2018Nov 19, 2018

    • gen3-exporter

      Public archive
      Export metadata from the gen3 platform
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•9•1•Updated Nov 14, 2018Nov 14, 2018

    • dos-dss-lambda

      Public archive
      Access HCA DSS using GA4GH DOS
      Python
      •
      MIT License
      •1•0•13•0•Updated Sep 14, 2018Sep 14, 2018

    • dos-gdc-lambda

      Public archive
      Access Genomic Data Commons data using GA4GH libraries
      Jupyter Notebook
      •
      MIT License
      •1•0•10•1•Updated Sep 14, 2018Sep 14, 2018

    • dos-resolver-lambda

      Public archive
      Implements a Data Object Service endpoint that can resolve from multiple services
      Python
      •
      Apache License 2.0
      •1•0•1•1•Updated Sep 14, 2018Sep 14, 2018

    • bouncer

      Public
      Simple email whitelist checker backed by the AWS Secrets Manager
      Python
      •
      Apache License 2.0
      •0•0•1•0•Updated Aug 30, 2018Aug 30, 2018

    • synapse-orchestrator

      Public
      Synapse-based orchestrator for GA4GH workflows
      Python
      •8•1•0•0•Updated Aug 23, 2018Aug 23, 2018

    • dev-workflow-service

      Public
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Jul 19, 2018Jul 19, 2018

    • cgp-dashboard-service

      Public archive
      A web API for powering the dcc-dashboard
      Python
      •
      Apache License 2.0
      •4•2•0•0•Updated Jul 10, 2018Jul 10, 2018

    • cgp-dss-azul-indexer

      Public archive
      This is the indexer that consumes events from the Blue Box and indexes them into Elasticsearch.
      Python
      •3•0•0•0•Updated Jul 10, 2018Jul 10, 2018
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