Seven Bridges

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34 repositories

dante
Public
Dante is a Python dependency validation tool
python dependencies requirements-management
python dependencies requirements-management lockfiles
Python
•
Apache License 2.0
•4•6•3•1•Updated Jan 13, 2026Jan 13, 2026
sevenbridges2
Public
Seven Bridges API R Client
cloud bioinformatics api-client
cloud bioinformatics api-client sevenbridges
R
•0•3•1•0•Updated Mar 31, 2025Mar 31, 2025
sevenbridges-python
Public
SevenBridges Python Api bindings
bioinformatics api-client sevenbridges
bioinformatics api-client sevenbridges common-workflow-language rest-client
Python
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Apache License 2.0
•29•47•7•1•Updated Feb 14, 2025Feb 14, 2025
sbShinyModules
Public
sbShinyModules is an R package designed to simplify the development of Shiny applications specifically for hosting as on-demand Shiny applications on Seven Brid…
R
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Apache License 2.0
•0•1•0•0•Updated Nov 1, 2024Nov 1, 2024
tidycwl
Public
Tidy Common Workflow Language Tools and Workflows
tidyverse bioinformatics-pipeline sevenbridges
tidyverse bioinformatics-pipeline sevenbridges common-workflow-language
Common Workflow Language
•2•9•0•0•Updated Jun 6, 2024Jun 6, 2024
biocompute
Public
Create and Manipulate BioCompute Objects
workflow bioinformatics sevenbridges
workflow bioinformatics sevenbridges standardization biocompute-objects science-communication biocompute
R
•3•3•1•0•Updated Jun 6, 2024Jun 6, 2024
sevenbridges-cwl-draft2-upgrader
Public
Command line tool to upgrade sbg:draft2 to CWL v1.0.
Python
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Apache License 2.0
•0•6•0•1•Updated Jan 9, 2024Jan 9, 2024
bco-app
Public
BCO App by Seven Bridges
sevenbridges common-workflow-language shiny-apps
sevenbridges common-workflow-language shiny-apps biocompute-objects biocompute
R
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GNU Affero General Public License v3.0
•4•7•7•0•Updated Jul 27, 2023Jul 27, 2023
sevenbridges-cwl
Public
Seven Bridges Python library for programatic generation of CWL workflows.
python bioinformatics sevenbridges
python bioinformatics sevenbridges common-workflow-language cwl
Python
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Other
•3•21•0•1•Updated Oct 26, 2022Oct 26, 2022
sevenbridges-r
Public
Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R
cloud bioinformatics api-client
cloud bioinformatics api-client bioconductor sevenbridges common-workflow-language
R
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Apache License 2.0
•14•36•12•1•Updated Jan 28, 2022Jan 28, 2022
okAPI
Public
Recipes and Tutorials for Automation & Extension on the CGC and SBPLAT platforms
Jupyter Notebook
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Creative Commons Attribution 4.0 International
•1•3•1•0•Updated Sep 2, 2021Sep 2, 2021
adk-examples
Public
Seven Bridges RHEO Automation Development Kit (ADK) examples
automation sevenbridges
automation sevenbridges
3•4•0•0•Updated Apr 21, 2021Apr 21, 2021
docs
Public
Supplementary resources for documentation for Seven Bridges producs
Jupyter Notebook
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Creative Commons Attribution 4.0 International
•1•1•0•0•Updated Mar 25, 2021Mar 25, 2021
GENAVi
Public
Example R Shiny app demonstrating Seven Bridges Platform integration via OAuth2.
oauth2 rna-seq r
oauth2 rna-seq r shiny-apps differential-gene-expression
HTML
•16•2•0•0•Updated Feb 24, 2021Feb 24, 2021
smart-variant-filtering
Public
Python
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BSD 3-Clause "New" or "Revised" License
•5•29•0•0•Updated Feb 17, 2021Feb 17, 2021
sbg_dockstore_tools
Public
cwl
cwl
Common Workflow Language
•6•2•0•1•Updated Dec 30, 2020Dec 30, 2020
data-repository-service-schemas
Public
A repository for the schemas used for the Data Repository Service.
Python
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Apache License 2.0
•56•0•0•0•Updated Mar 11, 2019Mar 11, 2019
Mitty
Public
Seven Bridges Genomics aligner/caller debugging and analysis tools
bioinformatics simulator genomics
bioinformatics simulator genomics
Python
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Apache License 2.0
•2•13•5•2•Updated Nov 20, 2018Nov 20, 2018
seventweets
Public
SevenTweets is project done as part of SevenBridges PythonWorkshop. This is one example of implementation.
Python
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Apache License 2.0
•2•2•0•0•Updated Oct 29, 2018Oct 29, 2018
cgc-api-documentation
Public
0•0•0•0•Updated May 15, 2018May 15, 2018
VBT-TrioAnalysis
Public
C++
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GNU General Public License v3.0
•2•13•4•0•Updated May 2, 2018May 2, 2018
geck
Public
Python
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GNU General Public License v3.0
•2•8•0•0•Updated Apr 5, 2018Apr 5, 2018
fuse
Public
A Go package for implementing a FUSE file system.
Go
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Apache License 2.0
•120•0•0•0•Updated Nov 30, 2017Nov 30, 2017
sevenbridges-java
Public
Seven Bridges Platform Java Library
java sevenbridges apiclient
java sevenbridges apiclient
Java
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Apache License 2.0
•2•2•0•0•Updated Aug 20, 2017Aug 20, 2017
sparqb
Public
Python
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Apache License 2.0
•1•1•0•0•Updated Jun 20, 2017Jun 20, 2017
public-ontologies
Public
Apache License 2.0
•1•2•0•0•Updated Jun 19, 2017Jun 19, 2017
dna2protein
Public
An example how to port a workflow with two commandtool to the CWL
Python
•4•3•0•0•Updated Apr 28, 2017Apr 28, 2017
icr-workshop
Public
ICR Workshop
Shell
•3•3•0•0•Updated Jan 25, 2017Jan 25, 2017
sevenbridges-node
Public
TypeScript
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Apache License 2.0
•0•0•0•0•Updated Oct 10, 2016Oct 10, 2016
dreamwebinars
Public
A repository for resources from the DREAM Challenge Webinars
Jupyter Notebook
•1•6•0•0•Updated Sep 27, 2016Sep 27, 2016