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    110 repositories

    • qube-cli

      Public
      Collection of QBiC's internal project templates
      hacktoberfest
      Python
      •
      MIT License
      •0•3•17•27•Updated Jan 9, 2023Jan 9, 2023

    • voronoi-treemap-cli

      Public
      portlet
      HTML
      •
      MIT License
      •1•0•2•2•Updated Jan 4, 2022Jan 4, 2022

    • r-analysis-templates

      Public
      Templates for pipeline downstream analysis with R and project reports with knitR
      HTML
      •1•1•1•0•Updated Jan 17, 2021Jan 17, 2021

    • docx4j-investigator-portlet

      Public
      Debugging portlet
      CSS
      •
      MIT License
      •0•0•0•1•Updated Dec 9, 2020Dec 9, 2020

    • metadata-utils-lib

      Public
      Helper library for openBIS meta data transformations
      Java
      •
      MIT License
      •0•0•0•0•Updated Aug 20, 2019Aug 20, 2019

    • bigdatabio-2018-pub

      Public
      Query scripts for the publication "Big Data in Bioanalytics"
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jul 8, 2019Jul 8, 2019

    • qbic-workflow-indproteome

      Public
      Workflow to create personalized protein references using FRED2.
      workflowngsdna
      Python
      •0•0•0•0•Updated Jun 7, 2019Jun 7, 2019

    • nexus-listener-service

      Public
      Java
      •
      MIT License
      •0•0•0•0•Updated Apr 8, 2019Apr 8, 2019

    • ncct-admin-portlet

      Public
      CSS
      •
      MIT License
      •0•0•0•0•Updated Mar 22, 2019Mar 22, 2019

    • slideshow-portlet

      Public
      CSS
      •
      MIT License
      •0•0•2•0•Updated Mar 15, 2019Mar 15, 2019

    • voronoi-treemap-portlet

      Public
      Visualization of hierarchical annotation data with Voronoi-Treemaps using the Vaadin framwork
      portlet
      HTML
      •
      MIT License
      •0•0•3•0•Updated Mar 12, 2019Mar 12, 2019

    • mtb-metadata-specs

      Public
      A collection of molecular tumor board (MTB) related specifications.
      Groovy
      •
      MIT License
      •0•0•0•0•Updated Mar 8, 2019Mar 8, 2019

    • qtrack-portlet

      Public
      other
      CSS
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 18, 2019Feb 18, 2019

    • rnaseq-power-cli

      Public
      Container to perform sample size computations based on RnaSeqSampleSize
      MIT License
      •0•0•0•0•Updated Feb 12, 2019Feb 12, 2019

    • qbic-wf-microarray-qc-old

      Public
      version used in our gUSE workflow for now
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 5, 2019Feb 5, 2019

    • templatebuilder

      Public
      other
      Java
      •0•0•0•0•Updated Jan 21, 2019Jan 21, 2019

    • workflow-submission-schema

      Public
      A humble try to create a JSON scheme for workflow submission requests.
      MIT License
      •0•0•0•0•Updated Nov 27, 2018Nov 27, 2018

    • VaadinSampleTracking

      Public
      Testgrounds for adding sample tracking to a vaadin UI
      CSS
      •1•0•0•0•Updated Nov 22, 2018Nov 22, 2018

    • basic-analysis-scripts

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Nov 8, 2018Nov 8, 2018

    • rnaseq

      Public
      workflowngsrna
      Python
      •1•0•1•2•Updated Oct 23, 2018Oct 23, 2018

    • nextflow

      Public
      A DSL for data-driven computational pipelines
      Groovy
      •
      GNU General Public License v3.0
      •773•0•0•0•Updated Oct 8, 2018Oct 8, 2018

    • nfparams-model-lib

      Public
      A Groovy library that reflects a Nextflow parameter model for prototyping
      Java
      •
      MIT License
      •0•0•0•0•Updated Oct 8, 2018Oct 8, 2018

    • exomseq

      Public
      workflowngsdna
      Python
      •2•0•0•0•Updated Oct 2, 2018Oct 2, 2018

    • hlatyping-workflow

      Public
      Precision HLA typing from next-generation sequencing data
      workflowngsdnarnahla
      Nextflow
      •
      MIT License
      •34•3•0•0•Updated Sep 25, 2018Sep 25, 2018

    • nf-registry-microservice

      Public
      A microservice consuming JSON objects emitted by Nextflows weblog feature and puts it into a DB.
      Groovy
      •
      MIT License
      •1•0•0•0•Updated Aug 2, 2018Aug 2, 2018

    • projectwizard_documentation

      Public
      other
      0•0•0•0•Updated Jul 23, 2018Jul 23, 2018

    • workflow_api

      Public
      library
      Java
      •0•0•0•0•Updated Jul 23, 2018Jul 23, 2018

    • qwizard

      Public archive
      Experimental design wizard
      other
      Java
      •1•1•1•0•Updated Jul 20, 2018Jul 20, 2018

    • qnavigator

      Public
      portlet
      CSS
      •
      GNU General Public License v3.0
      •1•0•8•0•Updated Jul 18, 2018Jul 18, 2018

    • microarray-qc-workflow

      Public
      Quality Control plots and data normalisation for Microarray data
      Nextflow
      •
      MIT License
      •0•1•0•0•Updated Jul 13, 2018Jul 13, 2018