National Microbiology Laboratory
Repositories list
159 repositories
irida-next
Publicarboratornf
PublicEPS suite Arborator pipelinemeaseq
PublicMeasles Sequence Analysis and Automationmikrokondo
PublicA simple pipeline for bacterial assembly and quality controlpathogen-view-components
Publicviralassembly
PublicAssemble and QC viral reads with a reference schemesubmitdatairidanext
PublicPipeline for submitting data to INSDC databases for IRIDA Nextmetadatatransformation
Publicfastmatchirida
PublicQuickly refines a reference set of samples based on distance.iridanextexample2
PublicAn example pipeline for running on IRIDA-Next with nf-schemastaramrnf
Publicnf-core StarAMRtypingQC
PublicGenotyping Quality Control (typingQC)beave
PublicA very Canadian utility for genomic clustering and distance querying.wade
Publicwade-data
Publicpuppet-irida
Publicirida-uploader
PublicArborView
PublicA new way to visualize beautiful phylogenetic trees alongside contextual data.legiovue
Publicgalaxy_tools
Publicstaramr
PublicScans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.nf-iridanext
Publiciridanextexample
Publicneptune
Publicgasnomenclature
PublicNomenclature assignment pipelinenf-ViralMutations
Publicasipython
Publicirida-plugin-example
Publicirida-plugin-ectyper
PublicIRIDA plugin for ECTyper (E.coli in silico typing tool)
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