Repositories list

• notifications

  Public
  Notifications for Pathoplexus submissions

  Python

  •

  GNU Affero General Public License v3.0

  •0•1•1•0•Updated Feb 18, 2026Feb 18, 2026

• ena-submission

  Public
  This repo should be used for uploading sequences that have been approved for release to ENA

  Python

  •0•0•10•1•Updated Feb 18, 2026Feb 18, 2026

• loculus_deployments

  Public
  Gitops definitions for Pathoplexus' Loculus deployments

  0•1•2•1•Updated Feb 16, 2026Feb 16, 2026

• pathoplexus

  Public
  An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.

  bioinformaticspublic-healthdata-sharing+ 3virus-evolutionsequencing-datavirus-sequences

  MDX

  •

  GNU Affero General Public License v3.0

  •6•49•89•9•Updated Feb 16, 2026Feb 16, 2026

• curation_data

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Feb 13, 2026Feb 13, 2026

• announcement_banners

  Public
  0•0•0•0•Updated Jan 7, 2026Jan 7, 2026

• silo-lineage-hierarchy-definitions

  Public
  Repository to keep SILO lineage hierarchy definition files

  Python

  •

  GNU Affero General Public License v3.0

  •1•1•0•1•Updated Dec 11, 2025Dec 11, 2025

• example_data

  Public
  Example data for users to try out Pathoplexus

  0•3•0•1•Updated Dec 3, 2025Dec 3, 2025

• curation_reports

  Public
  Curation reports for Pathoplexus

  0•4•6•0•Updated Feb 19, 2025Feb 19, 2025

• dev_example_data

  Public
  1•0•0•2•Updated Feb 18, 2025Feb 18, 2025