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32 repositories

domain_shift_anatomy
Public
Code release for the paper I. Zakazov, B. Shirokikh et al. "Anatomy of Domain Shift Impact on U-Net Layers in MRI Segmentation" (MICCAI 2021, oral).
Jupyter Notebook
•2•13•0•0•Updated Apr 27, 2026Apr 27, 2026
dicom-csv
Public
Utils for gathering, aggregation and handling metadata from DICOM files
python dicom
python dicom
Python
•
MIT License
•4•10•7•2•Updated Apr 14, 2026Apr 14, 2026
kerops
Public
Efficient operations on GPU
Python
•
MIT License
•0•3•0•1•Updated Apr 11, 2026Apr 11, 2026
imops
Public
Efficient parallelizable algorithms for multidimensional arrays to speed up your data pipelines
python parallel-computing image-processing
python parallel-computing image-processing
Python
•
MIT License
•1•22•14•1•Updated Jan 28, 2026Jan 28, 2026
thunder
Public
🌩️ The Deep Learning framework based on Lightning
python machine-learning deep-learning
python machine-learning deep-learning pytorch experiments pytorch-lightning
Python
•
MIT License
•2•11•31•1•Updated Dec 11, 2025Dec 11, 2025
deep_pipe
Public
A collection of tools for deep learning experiments
Python
•
MIT License
•8•37•4•1•Updated Dec 4, 2025Dec 4, 2025
amid
Public
Awesome Medical Imaging Datasets
python medical-imaging datasets
python medical-imaging datasets
Python
•
MIT License
•8•49•7•4•Updated Dec 1, 2025Dec 1, 2025
bev
Public
Flexible version control for files and folders
python git data
python git data storage version-control
Python
•
Apache License 2.0
•2•6•1•0•Updated Sep 12, 2025Sep 12, 2025
tarn
Public
An insanely customizable framework for key-value storage 💾
python memoization storage
python memoization storage cache persistent datalake
Python
•
Apache License 2.0
•0•3•2•0•Updated Sep 1, 2025Sep 1, 2025
anchor-free-genant
Public
Python
•
Other
•0•4•0•0•Updated Nov 11, 2024Nov 11, 2024
connectome
Public
A library for datasets containing heterogeneous data
python pipelines data-processing
python pipelines data-processing
Python
•
Apache License 2.0
•1•13•14•1•Updated Oct 3, 2024Oct 3, 2024
alssl
Public
0•0•0•0•Updated Aug 7, 2024Aug 7, 2024
curve-detection
Public
Jupyter Notebook
•
Other
•0•3•1•0•Updated Jun 22, 2024Jun 22, 2024
static-yoga
Public
Python
•
Apache License 2.0
•0•0•0•0•Updated Nov 7, 2023Nov 7, 2023
straighten
Public
Interpolation along multidimensional curves
Python
•
MIT License
•1•10•0•0•Updated Sep 8, 2022Sep 8, 2022
low-resolution
Public
Code release for the paper B. Shirokikh, A. Shevtsov et al. "Accelerating 3D Medical Image Segmentation by Adaptive Small-Scale Target Localization"
deep-learning medical-imaging lung-cancer-detection
deep-learning medical-imaging lung-cancer-detection medical-image-analysis medical-image-segmentation metastases
Jupyter Notebook
•0•2•0•0•Updated Oct 30, 2021Oct 30, 2021
pycharm-connectome-support
Public
Connectome Support for PyCharm
Java
•0•0•0•0•Updated Aug 30, 2021Aug 30, 2021
connectome-tutorials
Public
Jupyter Notebook
•0•2•0•0•Updated Jul 12, 2021Jul 12, 2021
COVID-19-Triage
Public
Python
•1•6•2•0•Updated Apr 25, 2021Apr 25, 2021
vertebral-fractures-severity
Public
Repository for the paper "Keypoints Localization for Joint Vertebra Detection and Fracture Severity Quantification"
Python
•
Other
•1•9•1•0•Updated Mar 23, 2021Mar 23, 2021
inverse_weighting
Public
Code release for the paper B. Shirokikh, A. Shevtsov et al. "Universal Loss Reweighting to Balance Lesion Size Inequality in 3D Medical Image Segmentation" (MIC…
Jupyter Notebook
•1•24•1•0•Updated Sep 13, 2020Sep 13, 2020
dpipe_tutorial_notebooks
Public
Jupyter Notebook
•0•0•0•0•Updated Jun 2, 2020Jun 2, 2020
midline-shift-detection
Public
Full code for the paper "Incorporating Task-Specific Structural Knowledge into CNNs for Brain Midline Shift Detection"
Python
•1•13•3•0•Updated Aug 19, 2019Aug 19, 2019
dpipe_mnist
Public
A short deep_pipe example
Python
•1•0•0•0•Updated Nov 20, 2018Nov 20, 2018
brats
Public
BraTS competition
Jupyter Notebook
•2•1•1•0•Updated Oct 2, 2018Oct 2, 2018
edr-gp
Public
A library for sparse Effective (functional) Dimensionality Reduction via Gaussian Processes
Python
•0•1•9•0•Updated Jun 28, 2018Jun 28, 2018
BIDSTransformers
Public
BIDS Transformers for neuroimaging data preprocessing based on BIDS and sklearn architecture
Python
•0•3•2•0•Updated Sep 1, 2017Sep 1, 2017
reskit
Public
A library for creating and curating reproducible pipelines for scientific and industrial machine learning
python pipeline reproducible-research
python pipeline reproducible-research scikit-learn grid-search data-preparation reproducible-experiments prepare-data
Jupyter Notebook
•
BSD 3-Clause "New" or "Revised" License
•7•29•13•0•Updated Jul 20, 2017Jul 20, 2017
resnet_cnn_mri_adni
Public
Code for Residual and Plain Convolutional Neural Networks for 3D Brain MRI Classification paper
Jupyter Notebook
•49•159•5•0•Updated Jun 20, 2017Jun 20, 2017
scipy_proceedings
Public
Tools used to generate the SciPy conference proceedings
Python
•
Other
•612•0•1•0•Updated Jun 19, 2017Jun 19, 2017

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NeuroML

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32 repositories

domain_shift_anatomy

dicom-csv

kerops

imops

thunder

deep_pipe

amid

bev

tarn

anchor-free-genant

connectome

alssl

curve-detection

static-yoga

straighten

low-resolution

pycharm-connectome-support

connectome-tutorials

COVID-19-Triage

vertebral-fractures-severity

inverse_weighting

dpipe_tutorial_notebooks

midline-shift-detection

dpipe_mnist

brats

edr-gp

BIDSTransformers

reskit

resnet_cnn_mri_adni

scipy_proceedings

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32 repositories