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    41 repositories

    • hk97-viruses-encapsulins-evolution

      Public
      Analysis code and data accompanying the accepted Nature Communications article: Small viruses reveal bidirectional evolution between HK97-fold viruses and enca…
      R
      •
      MIT License
      •0•0•0•0•Updated Jul 1, 2026Jul 1, 2026

    • chimerax_video_training

      Public
      This project is a training workspace for making capsid videos in UCSF ChimeraX.
      0•0•0•0•Updated Jun 14, 2026Jun 14, 2026

    • Environmental-Group

      Public
      Jupyter Notebook
      •0•0•9•0•Updated Apr 29, 2026Apr 29, 2026

    • team_superstars_BIL552

      Public
      BIL552, Bioinformatics Course, Team Superstars
      Jupyter Notebook
      •0•0•10•0•Updated Apr 29, 2026Apr 29, 2026

    • Flyby-Denial

      Public
      table of artemis ii skeptics
      Jupyter Notebook
      •1•1•0•0•Updated Apr 22, 2026Apr 22, 2026

    • lab-bioinformatics-workshops

      Public
      Repository for storing lab workshop materials, organized by topic folders.
      Jupyter Notebook
      •
      MIT License
      •1•1•0•0•Updated Feb 23, 2026Feb 23, 2026

    • test_webpage

      Public
      Shell
      •
      MIT License
      •0•0•1•2•Updated Jan 26, 2026Jan 26, 2026

    • Bioinformatic_Tools_Spring_2025

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Jan 22, 2026Jan 22, 2026

    • website

      Public
      Luque Lab Website
      1•0•6•0•Updated Nov 4, 2025Nov 4, 2025

    • ACUNAO-AI

      Public
      An AI assistant as a domain expert of a project's documents and has the ability to answer users’ queries accurately. It assists users with organizing their proj…
      artificial-intelligencellm
      artificial-intelligencellm
      Python
      •
      MIT License
      •1•2•3•0•Updated Aug 29, 2025Aug 29, 2025

    • pyCapsid

      Public
      Python package to extract quasi-rigid domains in protein shells and other macromolecular complexes.
      bioinformaticsstructural-biologyviruses
      bioinformaticsstructural-biologyvirusesbiophysics
      HTML
      •
      MIT License
      •1•10•28•0•Updated Jul 18, 2025Jul 18, 2025

    • Bioinformatics_Too_Indecisive

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Apr 30, 2025Apr 30, 2025

    • transient-dynamics

      Public
      A Jupyter notebook that simulates a Lotka-Volterra predator-prey system, investigating finite observational principles by calculating the weight per process and…
      data-visualizationdynamic-analysistransient-analysis
      data-visualizationdynamic-analysistransient-analysis
      Python
      •
      MIT License
      •0•1•1•0•Updated Apr 30, 2025Apr 30, 2025

    • bioinformatics-teamwinners

      Public
      This is the group project for the Bioinformatics Tools course for Team Winners: Jose-Bernard Sedalo, Izzie Childress, Miya Khoo, and Maria V Naffah
      Jupyter Notebook
      •
      MIT License
      •1•3•0•0•Updated Apr 29, 2025Apr 29, 2025

    • bioinformatics_mice_microbes

      Public
      S25 Bioinformatics group project for Of Mice & Microbes group. This repository contains a bioinformatics pipeline for analyzing sequence properties.
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Apr 29, 2025Apr 29, 2025

    • Bioinformatics-Underdogs

      Public
      This is the group project for Bioinformatic Tools (BIL552) at the University of Miami.
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Apr 23, 2025Apr 23, 2025

    • bioinformatics-teamCanes

      Public
      This is the group project for the Bioinformatics Tools course for team Canes
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Apr 23, 2025Apr 23, 2025

    • lab-data-science

      Public
      This repository contains code notebooks for common data science analyses carried in the interdisciplinary research at the Luque lab.
      Jupyter Notebook
      •
      MIT License
      •0•0•2•0•Updated Apr 14, 2025Apr 14, 2025

    • test_colab_to_github

      Public
      This repository is to illustrate how to edit a notebook in Colab and sync in Github.
      Jupyter Notebook
      •0•0•1•0•Updated Apr 9, 2025Apr 9, 2025

    • bioinformatics-teamX

      Public
      This group project for the Bioinformatics Tools course for Team X
      MIT License
      •0•0•0•0•Updated Apr 2, 2025Apr 2, 2025

    • hello-world

      Public
      MIT License
      •1•0•0•0•Updated Mar 26, 2025Mar 26, 2025

    • aurora_vogel_athena

      Public
      Python
      •0•0•4•0•Updated Dec 21, 2023Dec 21, 2023

    • dynamics

      Public
      Temporary public repository
      Jupyter Notebook
      •
      MIT License
      •0•1•14•0•Updated Nov 25, 2023Nov 25, 2023

    • AI_lab_assistant

      Public
      Interactive AI agent specialized on the Luque Lab domain knowledge
      Python
      •
      MIT License
      •0•1•0•0•Updated Oct 15, 2023Oct 15, 2023

    • GoldSim

      Public
      Python
      •0•0•0•0•Updated Aug 22, 2023Aug 22, 2023

    • Athena

      Public
      5•1•1•1•Updated Aug 11, 2023Aug 11, 2023

    • capsid-generator

      Public
      Generate and visualize capsid models.
      Python
      •0•1•0•0•Updated Aug 11, 2023Aug 11, 2023

    • HelloWorld

      Public
      Running the HelloWorld program
      Python
      •0•0•0•0•Updated Apr 19, 2023Apr 19, 2023

    • project_template

      Public template
      Python
      •
      MIT License
      •1•1•0•0•Updated Mar 15, 2023Mar 15, 2023

    • rigid_domain_subdivision

      Public
      Mechanical subdivision of viral capsids via Gaussian Network Models.
      Jupyter Notebook
      •0•0•0•0•Updated Mar 13, 2023Mar 13, 2023
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