Repositories list

• ingest-pipeline

  Public
  Data ingest pipeline(s) for QA/metadata etl/post-processing

  ot2od030545

  Python

  •

  MIT License

  •6•4•79•7•Updated Feb 26, 2026Feb 26, 2026

• xenium-pipeline

  Public
  ot2od030545

  Python

  •1•0•2•0•Updated Feb 26, 2026Feb 26, 2026

• hra-ui

  Public
  HRA UIs Monorepo (includes HRA Portal, EUI, RUI, ASCT+B Reporter, and more)

  human-reference-atlasot2od030545

  TypeScript

  •

  MIT License

  •4•6•112•7•Updated Feb 26, 2026Feb 26, 2026

• stellar

  Public
  Jupyter Notebook

  •0•0•1•0•Updated Feb 25, 2026Feb 25, 2026

• ingest-validation-tests

  Public
  ot2od030545

  Python

  •0•0•4•1•Updated Feb 25, 2026Feb 25, 2026

• ingest-api

  Public
  HuBMAP Data Ingest API

  ot2od030545

  Python

  •

  MIT License

  •0•0•12•2•Updated Feb 25, 2026Feb 25, 2026

• portal-ui

  Public
  HuBMAP Data Portal front end

  user-interfacehubmaphidivelab+ 1ot2od030545

  TypeScript

  •

  MIT License

  •3•13•175•29•Updated Feb 25, 2026Feb 25, 2026

• atac-data-products

  Public
  Data product creation for HIVE-processed ATAC-seq datasets

  ot2od030545

  Python

  •0•0•0•1•Updated Feb 25, 2026Feb 25, 2026

• expr-mask-convert

  Public
  Python

  •0•0•0•0•Updated Feb 25, 2026Feb 25, 2026

• sprm

  Public
  ot2od030545

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•4•3•1•Updated Feb 25, 2026Feb 25, 2026

• ccf-grlc

  Public
  ccf-grlc: Useful SPARQL queries for HRA work + API via grlc.io

  human-reference-atlasot2od030545

  JavaScript

  •

  MIT License

  •1•1•3•0•Updated Feb 25, 2026Feb 25, 2026

• ccf-validation-tools

  Public
  HRA ASCT+B Validation Reports

  human-reference-atlasot2od030545

  Python

  •

  Apache License 2.0

  •1•6•4•4•Updated Feb 25, 2026Feb 25, 2026

• ingest-ui

  Public
  HuBMAP Data Ingest Portal

  ot2od030545

  JavaScript

  •

  MIT License

  •0•4•64•5•Updated Feb 25, 2026Feb 25, 2026

• hra-registrations

  Public
  Manually curated HRA Dataset Graphs

  human-reference-atlasot2od030545

  HTML

  •

  MIT License

  •0•1•16•0•Updated Feb 24, 2026Feb 24, 2026

• dataset-metadata-spreadsheet

  Public
  This repository stores all the next-generation dataset metadata specification produced by the Data Coordination Working Group (DCWG). Every distinct folder corr…

  ot2od030545

  MIT License

  •0•1•0•0•Updated Feb 24, 2026Feb 24, 2026

• search-api

  Public
  HuBMAP search service and associated pieces to create an index

  ot2od030545

  Python

  •

  MIT License

  •2•2•21•1•Updated Feb 24, 2026Feb 24, 2026

• hra-do-processor

  Public
  hra-do-processor: HRA Digital Objects Processor

  human-reference-atlasot2od030545

  JavaScript

  •

  MIT License

  •1•4•16•3•Updated Feb 24, 2026Feb 24, 2026

• reharmonize-legacy-metadata

  Public
  Resources and outputs for aligning legacy metadata with new schema standards through mappings, patches and glossaries

  HTML

  •1•1•0•0•Updated Feb 24, 2026Feb 24, 2026

• documentation

  Public
  General Documentation For HuBMAP

  ot2od030545

  JavaScript

  •1•1•11•1•Updated Feb 24, 2026Feb 24, 2026

• entity-api

  Public
  A set of web service calls to return information about HuBMAP entities

  ot2od030545

  Python

  •

  MIT License

  •1•3•41•1•Updated Feb 20, 2026Feb 20, 2026

• aws-api-gateway

  Public
  API definitions, Lambda functions/authorizers/layer, and documentations to work with AWS API Gateway

  ot2od030545

  Python

  •0•1•1•0•Updated Feb 20, 2026Feb 20, 2026

• ingest-validation-tools

  Public
  HuBMAP data submission guidelines, and tools which check that submissions adhere to those guidelines.

  schemastandardsfair+ 3hubmaphidivelabot2od030545

  Python

  •

  MIT License

  •18•9•39•7•Updated Feb 19, 2026Feb 19, 2026

• hra-kg

  Public
  Human Reference Atlas Knowledge Graph

  human-reference-atlasot2od030545

  Mermaid

  •

  MIT License

  •1•4•10•0•Updated Feb 19, 2026Feb 19, 2026

• user-templates-api

  Public
  hidivelabot2od030545

  Jupyter Notebook

  •

  MIT License

  •4•0•4•1•Updated Feb 17, 2026Feb 17, 2026

• commons

  Public
  The common code supporting the HuBMAP web services

  ot2od030545

  Python

  •

  MIT License

  •0•1•6•1•Updated Feb 16, 2026Feb 16, 2026

• rna-data-products

  Public
  ot2od030545

  Python

  •

  GNU General Public License v3.0

  •0•0•4•0•Updated Feb 10, 2026Feb 10, 2026

• data-products-ui

  Public
  ot2od030545

  JavaScript

  •0•1•4•0•Updated Feb 9, 2026Feb 9, 2026

• files-api

  Public
  A RESTful service to for getting information about and registering files

  ot2od030545

  Python

  •

  MIT License

  •0•0•6•0•Updated Feb 2, 2026Feb 2, 2026

• portal-containers

  Public
  Docker containers to pre-process data for visualization in the portal

  hidivelabot2od030545

  Python

  •

  MIT License

  •1•0•22•27•Updated Feb 2, 2026Feb 2, 2026

• ome-tiff-pyramid

  Public
  ot2od030545

  Python

  •2•0•4•1•Updated Feb 2, 2026Feb 2, 2026