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    • CSS
      0009Updated Dec 8, 2022Dec 8, 2022
    • TOPMed RNA-seq CWL Workflow developed for Helium DataCommons
      Common Workflow Language
      4311Updated Jun 3, 2020Jun 3, 2020
    • CommonsShare is Helium Team's Web User Interface that explores using the cloud to access and share FAIR Biomedical big data
      Python
      2200Updated Apr 15, 2020Apr 15, 2020
    • Microservice which abstracts out OAuth2/OpenID exchanges and token management from applications
      Python
      54202Updated Sep 9, 2019Sep 9, 2019
    • iRODS connector for Django / Celery
      Python
      2000Updated Apr 22, 2019Apr 22, 2019
    • PIVOT simulator for research in scheduling algorithms in cross-cloud, geo-distributed environments
      Python
      2510Updated Mar 1, 2019Mar 1, 2019
    • PIVOT

      Public
      Python
      00140Updated Jan 26, 2019Jan 26, 2019
    • Shell
      1250Updated Jan 25, 2019Jan 25, 2019
    • a place for topmed workflows
      WDL
      23000Updated Jan 8, 2019Jan 8, 2019
    • Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows
      Python
      21000Updated Jan 4, 2019Jan 4, 2019
    • C++
      30000Updated Dec 12, 2018Dec 12, 2018
    • Data management in PIVOT
      Jupyter Notebook
      0000Updated Dec 1, 2018Dec 1, 2018
    • The Data Transfer Project makes it easy for people to transfer their data between online service providers. We are establishing a common framework, including da…
      Java
      490000Updated Nov 30, 2018Nov 30, 2018
    • A collection of user-based workflows, workspaces, needs and wishes for Helium
      0000Updated Nov 7, 2018Nov 7, 2018
    • Public Helium CWL Workflows
      Common Workflow Language
      0000Updated Oct 12, 2018Oct 12, 2018
    • documents

      Public
      Helium Team Documents
      0200Updated Oct 12, 2018Oct 12, 2018
    • Amazon Simple Storage Service (S3) resource plugin for iRODS
      C++
      16000Updated Oct 10, 2018Oct 10, 2018
    • Python
      0000Updated Oct 3, 2018Oct 3, 2018
    • This repository stores Dockerfiles and samples to build Docker images for hms-dbmi projects.
      Groovy
      4020Updated Sep 27, 2018Sep 27, 2018
    • toil

      Public
      A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python
      Python
      245000Updated Sep 12, 2018Sep 12, 2018
    • 0200Updated Jul 31, 2018Jul 31, 2018
    • Fractalis

      Public
      [Back-end] A scalable open-source service for platform-independent interactive visual analysis of biomedical data
      Python
      3000Updated Jul 31, 2018Jul 31, 2018
    • Python
      1130Updated Jul 25, 2018Jul 25, 2018
    • 1000Updated Jul 23, 2018Jul 23, 2018
    • Docker Splunk Enterprise image
      Shell
      263000Updated Jul 17, 2018Jul 17, 2018
    • Semantic Annotations for Linked Avro Data
      Python
      63000Updated Jul 16, 2018Jul 16, 2018
    • Network Aware iRODS API
      Python
      1000Updated Jul 2, 2018Jul 2, 2018
    • for storing packages for iRODS builds not available in the iRODS official repos
      Shell
      0000Updated Jun 26, 2018Jun 26, 2018
    • Generate files from docker container meta-data
      Go
      616000Updated May 30, 2018May 30, 2018
    • GA4GH Data Object Service for iRODS
      Java
      4000Updated Mar 27, 2018Mar 27, 2018