Repositories list

• azul

  Public
  Metadata indexer and query service used for AnVIL, HCA, LungMAP, and CGP

  Python

  •

  Apache License 2.0

  •44 forks•11 star•00 issues•88 pull requests•Updated Sep 1, 2026Sep 1, 2026

• dockstore

  Public
  An app store for scientific workflows, tools, notebooks, and services

  dockerworkflowbioinformatics+ 5

  dockerworkflowbioinformaticsnextflowcontainerswdlcwldockstore

  Java

  •

  Apache License 2.0

  •3131 forks•131131 stars•405405 issues•1515 pull requests•Updated Sep 1, 2026Sep 1, 2026

• dockstore-ui2

  Public
  Website user interface for Dockstore in Angular2

  angularnextflowwdl+ 3

  angularnextflowwdlcwlhacktoberfestdockstore

  TypeScript

  •

  Apache License 2.0

  •1717 forks•1919 stars•11 issue•1919 pull requests•Updated Aug 28, 2026Aug 28, 2026

• dockstore-support

  Public
  A collection of different projects supporting the dockstore initiative

  Java

  •

  Apache License 2.0

  •11 fork•33 stars•00 issues•00 pull requests•Updated Aug 28, 2026Aug 28, 2026

• dockstore-cli

  Public
  Command-line interface to dockstore, split out from main repo in version 1.8.0

  Java

  •

  Apache License 2.0

  •33 forks•55 stars•00 issues•33 pull requests•Updated Aug 28, 2026Aug 28, 2026

• swagger-java-zenodo-client

  Public
  swagger-java-zenodo-client

  Java

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•11 pull request•Updated Aug 27, 2026Aug 27, 2026

• openapi-java-invenio-client

  Public
  Java

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•11 pull request•Updated Aug 27, 2026Aug 27, 2026

• cwlavro

  Public
  Auto-generated Avro classes for manipulating CWL (starting with Java). Works with v1.0

  Java

  •

  Apache License 2.0

  •33 forks•66 stars•00 issues•44 pull requests•Updated Aug 27, 2026Aug 27, 2026

• dockstore-documentation

  Public
  The documentation for Dockstore.org

  workflownextflowtool+ 4

  workflownextflowtoolwdlcwlhacktoberfestdockstore

  Shell

  •

  Apache License 2.0

  •77 forks•33 stars•00 issues•00 pull requests•Updated Aug 26, 2026Aug 26, 2026

• lambda

  Public
  Till we find a better solution, backup and document AWS lambdas

  awslambdadockstore

  awslambdadockstore

  Java

  •

  Apache License 2.0

  •22 forks•11 star•00 issues•1010 pull requests•Updated Aug 17, 2026Aug 17, 2026

• swagger-java-sam-client

  Public
  swagger-java-sam-client

  00 forks•11 star•00 issues•00 pull requests•Updated Aug 17, 2026Aug 17, 2026

• extra-content

  Public
  A repo for external content, such as featured content

  hacktoberfest

  hacktoberfest

  HTML

  •

  Apache License 2.0

  •22 forks•00 stars•00 issues•00 pull requests•Updated Aug 12, 2026Aug 12, 2026

• swagger-java-bitbucket-client

  Public
  swagger-java-bitbucket-client

  00 forks•11 star•00 issues•00 pull requests•Updated Aug 10, 2026Aug 10, 2026

• swagger-java-discourse-client

  Public
  swagger-java-discourse-client

  00 forks•11 star•00 issues•00 pull requests•Updated Aug 10, 2026Aug 10, 2026

• swagger-java-quay-client

  Public
  swagger-java-quay-client

  00 forks•11 star•00 issues•00 pull requests•Updated Aug 10, 2026Aug 10, 2026

• workflow-actions

  Public
  Resuable github actions (unfortunately called workflows)

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 10, 2026Aug 10, 2026

• compose_setup

  Public
  Demonstrate how to setup and run Dockstore using composed containers

  dockerdocker-compose

  dockerdocker-compose

  Shell

  •

  Apache License 2.0

  •22 forks•22 stars•00 issues•00 pull requests•Updated Jul 28, 2026Jul 28, 2026

• ontology

  Public
  Python

  •

  Other

  •00 forks•11 star•00 issues•00 pull requests•Updated Jul 9, 2026Jul 9, 2026

• snakemake-language-interface

  Public
  Experimental implementation of support for Snakemake

  Python

  •

  Apache License 2.0

  •22 forks•11 star•00 issues•11 pull request•Updated Mar 27, 2026Mar 27, 2026

• tool-registry-service-schemas

  Public
  APIs for discovering genomics tools, their metadata and their containers

  Shell

  •

  Apache License 2.0

  •1818 forks•00 stars•00 issues•77 pull requests•Updated Dec 4, 2025Dec 4, 2025

• dockstore-tool-bamstats

  Public
  A repo for the BAMStats command, used as the tutorial for Dockstore

  Common Workflow Language

  •

  Apache License 2.0

  •7272 forks•00 stars•00 issues•11 pull request•Updated Nov 27, 2025Nov 27, 2025

• dockstore-load-tester

  Public
  Dockstore Load/Performance/Stress Tester

  Scala

  •

  Apache License 2.0

  •00 forks•33 stars•00 issues•00 pull requests•Updated Jun 9, 2025Jun 9, 2025

• ng2-ui-auth

  Public
  an angular2 repository for authentication based on angular1's satellizer

  TypeScript

  •

  MIT License

  •6262 forks•00 stars•00 issues•55 pull requests•Updated Sep 23, 2024Sep 23, 2024

• icgc-storage-client-plugin

  Public archive
  icgc storage client file provisioning plugin

  javaicgcdockstore+ 1

  javaicgcdockstorefile-provisioning

  Java

  •

  Apache License 2.0

  •11 fork•00 stars•11 issue•00 pull requests•Updated Aug 12, 2024Aug 12, 2024

• bcc2020-training

  Public
  Training materials for our BCC 2020 training workshop.

  dockernextflowwdl+ 5

  dockernextflowwdlcwlhacktoberfestdockstorebccbosc

  Common Workflow Language

  •55 forks•22 stars•00 issues•00 pull requests•Updated Aug 9, 2024Aug 9, 2024

• example-notebook

  Public
  This repository contains a simple notebook example from Jupyter for running code.

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 11, 2024Apr 11, 2024

• dockstore-trs-notebook

  Public
  This repository contains a notebook demonstrating how to use TRS.

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 8, 2024Feb 8, 2024

• .github

  Public
  default community health files

  Apache License 2.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Feb 1, 2024Feb 1, 2024

• maintenance-downtime-content

  Public
  HTML

  •

  Apache License 2.0

  •00 forks•00 stars•11 issue•00 pull requests•Updated Jan 12, 2024Jan 12, 2024

• hubflow

  Public
  A copy of hubflow for safe-keeping

  Shell

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 10, 2024Jan 10, 2024