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    115 repositories

    • search-ui

      Public
      JavaScript
      •0•0•1•0•Updated Mar 6, 2026Mar 6, 2026

    • search-adaptor

      Public
      An adaptor used to create application, domain specific RESTful web service against Elasticsearch
      Python
      •
      MIT License
      •1•0•0•1•Updated Mar 6, 2026Mar 6, 2026

    • faersdbstats

      Public
      Generate safety signal statistics from FDA FAERS data
      Shell
      •
      Apache License 2.0
      •33•5•8•0•Updated Mar 2, 2026Mar 2, 2026

    • onsides

      Public
      A resource of adverse drug effects extracted from FDA structured product labels
      Jupyter Notebook
      •
      MIT License
      •9•0•0•0•Updated Feb 27, 2026Feb 27, 2026

    • m4

      Public
      Give your AI agents clinical intelligence & access to MIMIC-IV, eICU, and more. This project provides them with MCP, code execution, and clinical agent skills.
      Python
      •
      MIT License
      •9•0•0•0•Updated Feb 10, 2026Feb 10, 2026

    • ad_prediction_PLP

      Public
      Random Forest Patient Level Prediction of Alzheimer's Disease 10 years in advance using EHR data. Includes a permuted feature importance (PFI) analysis knee poi…
      R
      •0•0•0•0•Updated Oct 27, 2025Oct 27, 2025

    • omop-concept-automapper

      Public
      An automated system for mapping source medical concepts to OMOP standard concepts using vector similarity search and LLM-based reranking.
      Python
      •
      MIT License
      •5•0•0•0•Updated Aug 8, 2025Aug 8, 2025

    • EmbeddingsLibrary

      Public
      1•0•0•0•Updated Jul 28, 2025Jul 28, 2025

    • OhdsiVocabVectorStore

      Public
      Python
      •1•0•0•0•Updated Jul 14, 2025Jul 14, 2025

    • r3-neptuner

      Public
      Web application for specifying tables and fields from Neptune for R3 requests
      MIT License
      •0•0•0•0•Updated Mar 3, 2025Mar 3, 2025

    • Geri-DL

      Public
      Deep learning for predicting clinical events in frail elderly
      Jupyter Notebook
      •3•0•0•0•Updated Nov 24, 2024Nov 24, 2024

    • ddi-cds

      Public
      All drug-drug interaction CDS rules written in Drools from the AHRQ funded projects
      Java
      •0•4•2•14•Updated Nov 13, 2024Nov 13, 2024

    • word2vec-service

      Public
      Google word2vec as a service
      Python
      •
      MIT License
      •5•0•0•0•Updated Nov 11, 2024Nov 11, 2024

    • cdss-testing-harness

      Public
      JavaScript
      •
      Apache License 2.0
      •2•0•0•0•Updated Aug 2, 2024Aug 2, 2024

    • browserfy-cql-exec-vsac

      Public
      A VSAC-enabled code service for the JavaScript CQL Execution project
      JavaScript
      •
      Apache License 2.0
      •8•0•0•0•Updated Jun 26, 2024Jun 26, 2024

    • np-kg

      Public
      NP-KG: Knowledge Graph Framework for Natural Product-Drug Interactions
      Jupyter Notebook
      •
      Apache License 2.0
      •2•1•0•0•Updated Jun 25, 2024Jun 25, 2024

    • ClinicalTransformerNER

      Public
      a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms
      Python
      •
      MIT License
      •29•0•0•0•Updated May 11, 2024May 11, 2024

    • SDoH_SODA

      Public
      Python
      •
      MIT License
      •4•0•0•0•Updated May 3, 2024May 3, 2024

    • AutoKG

      Public
      Efficient Automated Knowledge Graph Generation for Large Language Models
      Jupyter Notebook
      •
      MIT License
      •19•0•0•0•Updated Apr 30, 2024Apr 30, 2024

    • hades_proxy_manager

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 28, 2024Apr 28, 2024

    • SODA_Docker

      Public
      repo for pipeline development
      Python
      •1•0•0•0•Updated Apr 14, 2024Apr 14, 2024

    • sandbox-community-edition

      Public
      Repository for the free community edition of the sandbox
      Shell
      •16•0•0•0•Updated Apr 8, 2024Apr 8, 2024

    • ULTRA

      Public
      A foundation model for knowledge graph reasoning
      Python
      •
      MIT License
      •82•0•0•0•Updated Mar 22, 2024Mar 22, 2024

    • MME_calculation

      Public
      Python
      •1•0•0•0•Updated Feb 28, 2024Feb 28, 2024

    • jupyterlab-limit-output

      Public
      Limit long text output for a single JupyterLab mime render.
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •8•0•0•0•Updated Jan 25, 2024Jan 25, 2024

    • FOLIO

      Public
      Creative Commons Attribution Share Alike 4.0 International
      •14•0•0•0•Updated Dec 22, 2023Dec 22, 2023

    • prontoqa

      Public
      Synthetic question-answering dataset to formally analyze the chain-of-thought output of large language models on a reasoning task.
      Python
      •
      Apache License 2.0
      •16•0•0•0•Updated Oct 21, 2023Oct 21, 2023

    • np-terminology-imports

      Public
      A natural product terminology that maps botanical natural product Latin binomials to chemical constituents (e.g., metabolites), common names, and spelling varia…
      Python
      •
      Apache License 2.0
      •0•2•2•0•Updated Oct 15, 2023Oct 15, 2023

    • rio-programs-strategic-initiatives

      Public
      Repository for tracking RIO and Strategic Initiatives - Jonathan and Kay
      0•0•1•0•Updated Aug 1, 2023Aug 1, 2023

    • np_name_finder

      Public
      A project to use different computational approaches to identify natural product mentions in unstructured character strings.
      cosine-similarityfuzzy-string-matchingranking-algorithm
      cosine-similarityfuzzy-string-matchingranking-algorithm
      Jupyter Notebook
      •
      Apache License 2.0
      •1•2•0•0•Updated Jul 21, 2023Jul 21, 2023