Repositories list

• cns-website

  Public
  [WIP] The new CNS website

  JavaScript

  •0•0•17•0•Updated Mar 18, 2026Mar 18, 2026

• upptime

  Public
  CNS Services Uptime Monitor

  Markdown

  •

  MIT License

  •0•0•0•0•Updated Mar 18, 2026Mar 18, 2026

• data-vis-xr-panel-2025

  Public
  Panel website for the IEEE VIS 2025 panel entitled "TALK, TRY, TELL: Challenges and Opportunities for Theory-Grounded Data Visualization in Extended Reality"

  MAXScript

  •0•0•0•0•Updated Mar 13, 2026Mar 13, 2026

• cns-unity-ai-vr

  Public
  Code for VR-AI-ment, a prototype to study embodiments of AI in VR spaces

  Wolfram Language

  •0•0•4•0•Updated Mar 12, 2026Mar 12, 2026

• hra-ftu-explorer-supporting-information

  Public
  Supporting information page for the FTU Explorer paper (in progress)

  human-reference-atlassupporting-information

  human-reference-atlassupporting-information

  Jupyter Notebook

  •0•0•1•0•Updated Mar 12, 2026Mar 12, 2026

• hra-amap

  Public
  HRA-AMAP: Bidirectional Projections Between Human Atlas Systems for Data and Code Interoperability

  human-reference-atlas

  human-reference-atlas

  Jupyter Notebook

  •

  MIT License

  •2•2•6•0•Updated Mar 10, 2026Mar 10, 2026

• hra-cell-type-populations-supporting-information

  Public
  Supporting information page for the HRApop paper

  human-reference-atlassupporting-information

  human-reference-atlassupporting-information

  Jupyter Notebook

  •1•0•0•0•Updated Feb 27, 2026Feb 27, 2026

• hra-cfde-marker-visualizations

  Public
  Visualizations for the CFDE Marker Paper 2026

  Jupyter Notebook

  •0•0•0•0•Updated Feb 23, 2026Feb 23, 2026

• ctann-data-descriptor-supporting-information

  Public
  Supporting Information for "Constructing, Validating, and Using Human Reference Atlas Crosswalks"

  Jupyter Notebook

  •0•0•0•0•Updated Feb 23, 2026Feb 23, 2026

• coi-supporting-information

  Public
  Supporting information page for 'Mapping the Hidden Backbone of Industry-Academia: A Longitudinal Network Analysis of Conflict of Interest Statements in the Hum…

  Python

  •

  MIT License

  •0•0•0•0•Updated Feb 19, 2026Feb 19, 2026

• hra-ftu-rag-supporting-information

  Public
  Supporting information page for "AI-Driven Functional Tissue Unit Characteristics Discovery for the Human Reference Atlas"

  Python

  •

  MIT License

  •0•0•0•0•Updated Feb 16, 2026Feb 16, 2026

• hra-deepcell-experiments

  Public
  Using Deepcell and Deepcelltypes for cell segmentation and annotation of relevant single-cell multiplexed imaging datasets.

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Feb 12, 2026Feb 12, 2026

• hra-enter-vr

  Public
  TypeScript

  •0•0•0•0•Updated Feb 10, 2026Feb 10, 2026

• scimaps

  Public

  cns-iu/scimaps’s past year of commit activity
  SciMaps website

  TypeScript

  •0•3•23•0•Updated Feb 9, 2026Feb 9, 2026

• issi-vr-workshop-2023

  Public
  A GitHub repository to hold the code for ISSI 2023 workshop on network visualization in VR

  C#

  •0•0•0•0•Updated Feb 9, 2026Feb 9, 2026

• hra-organ-gallery-supporting-information

  Public
  Supporting Information for "Virtual Reality Enables Multiscale Exploration of the Human Reference Atlas"

  human-reference-atlassupporting-information

  human-reference-atlassupporting-information

  0•0•0•0•Updated Feb 9, 2026Feb 9, 2026

• macroscope-kiosk

  Public
  The Macroscope Kiosk is an application to access macroscopes from the Places & Spaces: Mapping Science exhibit

  TypeScript

  •

  MIT License

  •1•0•3•13•Updated Jan 29, 2026Jan 29, 2026

• hra-butterfly

  Public
  HRA Butterfly Visualization

  Jupyter Notebook

  •3•0•0•1•Updated Jan 27, 2026Jan 27, 2026

• myaura

  Public
  Python

  •

  MIT License

  •1•2•4•2•Updated Jan 24, 2026Jan 24, 2026

• hra-kg-experiments

  Public
  One off code-projects that use the HRA KG

  Shell

  •

  MIT License

  •0•0•0•0•Updated Jan 23, 2026Jan 23, 2026

• hra-mouse-registrations

  Public
  Blender files and models for 5x5 mouse registrations

  human-reference-atlas

  human-reference-atlas

  1•0•0•0•Updated Jan 16, 2026Jan 16, 2026

• katy

  Public
  Dr. Katy Borner's Profile Page

  HTML

  •0•0•0•0•Updated Jan 11, 2026Jan 11, 2026

• hra-cell-distance-analysis

  Public
  Cell Distance Analysis for Spatial Omics Datasets, primarily focused on vascular cells.

  Jupyter Notebook

  •

  MIT License

  •0•2•0•0•Updated Jan 6, 2026Jan 6, 2026

• cns-multiscale-voyage

  Public
  A Unity project for Humanexus 2.0

  Python

  •0•0•1•1•Updated Dec 12, 2025Dec 12, 2025

• hra-glb-preprocessor

  Public
  Make meshes manifold and filling holes. Generate OFF file for a single mesh from GLB

  Python

  •0•0•0•0•Updated Dec 10, 2025Dec 10, 2025

• hra-3d-cell-generation-api

  Public
  API to generate 3D Cells inside Anatomical Structures

  human-reference-atlas

  human-reference-atlas

  C++

  •0•0•0•0•Updated Dec 10, 2025Dec 10, 2025

• dvl-llm

  Public
  Data Visualization Literacy Framework + LLMs

  Jupyter Notebook

  •1•0•3•0•Updated Dec 5, 2025Dec 5, 2025

• cns-humanexus-2.0-unity-sphere-animation

  Public
  C#

  •0•0•0•0•Updated Nov 25, 2025Nov 25, 2025

• hra-hackathon-data

  Public
  Jupyter Notebook

  •

  MIT License

  •1•1•1•2•Updated Nov 18, 2025Nov 18, 2025

• hra-node-dist-vis

  Public
  HRA Node Distance Visualization Web Component

  human-reference-atlas

  human-reference-atlas

  JavaScript

  •

  MIT License

  •0•2•0•0•Updated Nov 17, 2025Nov 17, 2025