Repositories list

• htsjdk-next-beta

  Public
  Staging ground for the development of the next major version of HTSJDK

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •3•0•0•0•Updated Jan 16, 2019Jan 16, 2019

• htsjdk

  Public
  A Java API for high-throughput sequencing data (HTS) formats.

  Java

  •242•0•0•0•Updated Nov 14, 2018Nov 14, 2018

• gatk

  Public
  GATK4 development

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •625•0•0•0•Updated Oct 28, 2018Oct 28, 2018

• disq

  Public
  A library for manipulating bioinformatics sequencing formats in Apache Spark

  Java

  •

  MIT License

  •12•0•0•0•Updated Oct 27, 2018Oct 27, 2018

• bioinformagik.github.io

  Public
  Bioinformagik Site

  HTML

  •0•0•0•0•Updated Aug 9, 2018Aug 9, 2018

• swimpool

  Public
  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jun 28, 2018Jun 28, 2018

• hts-specs

  Public
  Specifications of SAM/BAM and related high-throughput sequencing file formats

  TeX

  •179•0•0•0•Updated Jun 28, 2018Jun 28, 2018

• barclay

  Public
  Command line argument parser and online documentation generation utilities for java command line programs.

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •6•0•0•0•Updated Jun 27, 2018Jun 27, 2018

• bwa

  Public
  Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

  C

  •

  GNU General Public License v3.0

  •578•0•0•0•Updated Jun 12, 2018Jun 12, 2018

• hdf5-java-bindings

  Public
  java bindings for hdf5

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •4•0•0•0•Updated Jul 21, 2017Jul 21, 2017