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    55 repositories

    • TWASKnockoff

      Public
      TWASKnockoff: A Knockoff-based Framework for Causal Genes Identifications
      R
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Mar 20, 2026Mar 20, 2026

    • YCSGP.github.io

      Public
      HTML
      •
      MIT License
      •2•2•0•0•Updated Feb 27, 2026Feb 27, 2026

    • UTMOST

      Public
      UTMOST (unified test for molecular signatures) is a method for cross-tissue gene expression imputation for transcriptome-wide association analyses.
      Python
      •18•0•0•0•Updated Nov 26, 2025Nov 26, 2025

    • JointPRS

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Aug 16, 2025Aug 16, 2025

    • EEPRS

      Public
      1•2•0•0•Updated Jul 24, 2025Jul 24, 2025

    • MIXPRS

      Public
      Python
      •1•0•0•0•Updated Jul 1, 2025Jul 1, 2025

    • scMODAL

      Public
      scMODAL: A general deep learning framework for single-cell Multi-Omics Data Alignment with feature Links
      Python
      •
      GNU General Public License v3.0
      •4•0•0•0•Updated Jun 10, 2025Jun 10, 2025

    • PERADIGM

      Public
      PERADIGM: Phenotype Embedding Similarity-based Rare Disease Gene Mapping
      R
      •1•0•0•0•Updated Apr 24, 2025Apr 24, 2025

    • Pathway-Analysis-using-Random-Forest

      Public
      An R code for pathway-based classification and regression using Random Forests.
      0•0•0•0•Updated Mar 3, 2025Mar 3, 2025

    • LORS

      Public
      A Low-Rank representation and Sparse regression for eQTL mapping. This algorithm accounts for confounding factors such as unobserved covariates, experimental ar…
      MATLAB
      •0•0•0•0•Updated Mar 3, 2025Mar 3, 2025

    • GWAS-with-MRF-pathway

      Public
      This is a program to implement the Markov Random Field (MRF) method to incorporate pathway topology for genome wide association studies.
      R
      •0•0•0•0•Updated Mar 3, 2025Mar 3, 2025

    • viRandomForests

      Public
      Variable importance-weighted Random Forests (viRandomForests) is an R package, which samples features according to their variable importance scores, and then se…
      0•0•0•0•Updated Mar 2, 2025Mar 2, 2025

    • GWAS.PC

      Public
      GWAS.PC (GWAS Power Calculation) is an R package that does power analysis in genome wide association studies. In particular, genotyping error is considered in p…
      R
      •0•0•0•0•Updated Mar 2, 2025Mar 2, 2025

    • gbr

      Public
      This is an R package implementing a post-GWAS prioritization algorithm, which incorporates the rewiring information of co-expression network to prioritize GWAS …
      R
      •0•0•0•0•Updated Mar 2, 2025Mar 2, 2025

    • COSINE

      Public
      :exclamation: This is a read-only mirror of the CRAN R package repository. COSINE — COndition SpecIfic sub-NEtwork
      R
      •2•0•0•0•Updated Mar 2, 2025Mar 2, 2025

    • GenomeAnnotation

      Public
      0•0•0•0•Updated Mar 1, 2025Mar 1, 2025

    • SDPRX

      Public
      A statistical method for cross-population prediction of complex traits
      Python
      •
      MIT License
      •1•0•0•0•Updated Feb 21, 2025Feb 21, 2025

    • SuSiE2

      Public
      Code for simulations and real data analysis for SuSiE2
      R
      •1•0•0•0•Updated Jan 17, 2025Jan 17, 2025

    • CosGeneGate

      Public
      Python
      •
      MIT License
      •2•0•0•0•Updated Jan 17, 2025Jan 17, 2025

    • scLAMBDA

      Public
      Modeling and predicting single-cell multi-gene perturbation responses with scLAMBDA
      Python
      •
      GNU General Public License v3.0
      •5•0•0•0•Updated Jan 14, 2025Jan 14, 2025

    • CASE

      Public
      CASE: Cell-type-specific And Shared EQTL Fine-mapping
      R
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Dec 15, 2024Dec 15, 2024

    • SpacePAC

      Public
      This is a read-only mirror of the git repos at https://bioconductor.org
      TeX
      •1•0•0•0•Updated Dec 8, 2024Dec 8, 2024

    • QuartPAC

      Public
      This is a read-only mirror of the git repos at https://bioconductor.org
      TeX
      •1•0•0•0•Updated Dec 8, 2024Dec 8, 2024

    • dcGSA

      Public
      This is a read-only mirror of the git repos at https://bioconductor.org
      R
      •1•0•0•0•Updated Dec 7, 2024Dec 7, 2024

    • MARBLES

      Public
      A Markov Random Field Model-Based Approach for Differentially Expressed Gene Detection in Single-cell RNA-seq Data
      R
      •1•0•0•0•Updated Dec 4, 2024Dec 4, 2024

    • LDER-GE

      Public
      We propose a statistical method to estimate the phenotypic variance explained by Gene-Envieonment interactions. The method is called Linkage-Disequilibrium Eige…
      R
      •
      MIT License
      •7•0•0•0•Updated Nov 26, 2024Nov 26, 2024

    • SDPR_admix

      Public
      A statistical method to calculate PRS in admixed population
      C
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Nov 26, 2024Nov 26, 2024

    • SDPR

      Public
      A fast and robust Bayesian nonparametric method for prediction of complex traits using GWAS summary statistics
      C
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Nov 18, 2024Nov 18, 2024

    • SplitClusterTest.jl

      Public
      Julia package for "FDR Control via Data Splitting for Testing-after-Clustering (arXiv: 2410.06451)"
      Julia
      •
      MIT License
      •1•0•0•0•Updated Nov 6, 2024Nov 6, 2024

    • SplitClusterTest

      Public
      R package for "FDR Control via Data Splitting for Testing-after-Clustering (arXiv: 2410.06451)"
      R
      •
      Other
      •2•0•0•0•Updated Nov 6, 2024Nov 6, 2024
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