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@Snakemake-Profiles Snakemake-Profiles

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    8 repositories

    • htcondor

      Public
      Snakemake profile for HTCondor
      Python
      •
      MIT License
      •18•14•2•0•Updated Nov 7, 2024Nov 7, 2024

    • lsf

      Public
      Snakemake profile for running jobs on an LSF cluster
      profilebioinformaticssnakemakeclusterlsfbioinformatics-pipelinesnakemake-pipelinescluster-profilesnakemake-profile
      Python
      •
      MIT License
      •22•38•8•1•Updated Jul 29, 2024Jul 29, 2024

    • slurm

      Public
      Cookiecutter for snakemake slurm profile
      Python
      •
      MIT License
      •52•134•15•1•Updated Apr 25, 2024Apr 25, 2024

    • pbs-torque

      Public
      Python
      •
      MIT License
      •21•17•6•2•Updated Oct 20, 2023Oct 20, 2023

    • sge

      Public
      Snakemake profile for the (Sun) Grid Engine queueing system
      Python
      •10•17•0•0•Updated Jul 13, 2023Jul 13, 2023

    • generic

      Public
      Python
      •
      MIT License
      •11•7•1•0•Updated Nov 17, 2022Nov 17, 2022

    • doc

      Public
      Documentation of the Snakemake-Profiles project.
      MIT License
      •8•55•11•0•Updated Mar 15, 2022Mar 15, 2022

    • surfsara-grid

      Public
      This profile configures Snakemake to run on the SURFsara Grid (https://www.surf.nl/en/services-and-products/grid/index.html).
      Python
      •
      MIT License
      •2•4•1•0•Updated May 8, 2018May 8, 2018