PathoGenOmics Lab
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15 repositories
VIPERA
PublicA Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysisget_MNV
Publicdistree
Publicfstic
PublicCalculates pairwise distances between samples using alelle frequenciessnpick
Publicsnpick is a fast and memory-efficient Rust-based SNP extraction tool designed to handle large genomic alignments with minimal RAM usage and high-speed performan…pathotypr
PublicGenome classificator using machine learning and SNP markers.afwdist
PublicmycolorsTB
PublicR Color package for Mycobacterium tuberculosis complextranscluster
PublicA Snakemake workflow to find SARS-CoV-2 clusters in a reference phylogeny and estimate their normalized clustering indextcfinder
PublicA lightweight tool to find clusters of samples within a phylogeny- A Snakemake workflow with associated scripts used for detecting spike NTD repaired deletions in SARS-CoV-2 Omicron BA.1 lineage reads
SARStools
PublicCrossInfectMTB
Publicmisb-sysbio-training
PublicMaster on Integrative Synthetic Biology (MISB) training sessionsgetNCBImetadata
Public
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