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    • jbrowse-plugin-protein3d

      Public
      3D protein structure visualizer in jbrowse 2 - WIP
      TypeScript
      0060Updated Apr 14, 2026Apr 14, 2026
    • jbrowse-components

      Public
      Source code for JBrowse 2, a modern React-based genome browser
      TypeScript
      Apache License 2.0
      802781788Updated Apr 14, 2026Apr 14, 2026
    • TypeScript
      1642Updated Apr 14, 2026Apr 14, 2026
    • multiple sequence alignment browser plugin for JBrowse 2
      TypeScript
      Apache License 2.0
      0661Updated Apr 14, 2026Apr 14, 2026
    • jbrowse-plugin-mafviewer

      Public
      A viewer for multiple alignment format (MAF) files in JBrowse 2
      TypeScript
      014110Updated Apr 14, 2026Apr 14, 2026
    • jb2hubs

      Public
      Source code for the JBrowse 2 genome hubs webite and data processing scripts
      TypeScript
      00331Updated Apr 14, 2026Apr 14, 2026
    • hclust

      Public
      Hierarchical clustering in javascript
      TypeScript
      0200Updated Apr 11, 2026Apr 11, 2026
    • vcf-js

      Public
      Variant Call Format (VCF) parser
      TypeScript
      MIT License
      42622Updated Apr 10, 2026Apr 10, 2026
    • Apollo3

      Public
      JBrowse 2 plugin for editing annotations on an Apollo server
      TypeScript
      Apache License 2.0
      915722Updated Apr 7, 2026Apr 7, 2026
    • A multiple sequence alignment viewer
      JavaScript
      MIT License
      325240Updated Apr 7, 2026Apr 7, 2026
    • bbi-js

      Public
      Parser for bigwig and bigbed files
      TypeScript
      MIT License
      6830Updated Apr 4, 2026Apr 4, 2026
    • twobit-js

      Public
      Read .2bit files with pure JS. Works in node or webpack.
      TypeScript
      MIT License
      1401Updated Mar 31, 2026Mar 31, 2026
    • Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi
      TypeScript
      MIT License
      31200Updated Mar 31, 2026Mar 31, 2026
    • nclist-js

      Public
      Read JBrowse v1 nested containment list feature stores from modern JS
      TypeScript
      MIT License
      0001Updated Mar 31, 2026Mar 31, 2026
    • JBrowse fork of mobx-state-tree, based on v5.4.2
      TypeScript
      MIT License
      0000Updated Mar 29, 2026Mar 29, 2026
    • tabix-js

      Public
      Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser
      TypeScript
      MIT License
      41420Updated Mar 28, 2026Mar 28, 2026
    • read and write UCSC track and assembly hub files in node or the browser
      TypeScript
      MIT License
      1551Updated Mar 28, 2026Mar 28, 2026
    • trix-js

      Public
      Read UCSC Trix indexes in pure JavaScript
      TypeScript
      Apache License 2.0
      2001Updated Mar 28, 2026Mar 28, 2026
    • jexl

      Public
      fork of TomFrost/jexl for jbrowse use
      JavaScript
      MIT License
      0000Updated Mar 28, 2026Mar 28, 2026
    • ixixx-js

      Public
      TypeScript
      MIT License
      2310Updated Mar 28, 2026Mar 28, 2026
    • gff-js

      Public
      parse and format streams of GFF3, for node or webpack
      TypeScript
      MIT License
      51001Updated Mar 28, 2026Mar 28, 2026
    • modernization of the original generic-filehandle, no Buffer polyfill needed
      TypeScript
      0001Updated Mar 28, 2026Mar 28, 2026
    • TypeScript
      1000Updated Mar 28, 2026Mar 28, 2026
    • faidx-js

      Public
      Index a FASTA file similar to `samtools faidx` using pure js
      TypeScript
      MIT License
      0200Updated Mar 28, 2026Mar 28, 2026
    • cram-js

      Public
      Read CRAM v3 and v2 in node or in the browser
      C
      MIT License
      91892Updated Mar 28, 2026Mar 28, 2026
    • bed-js

      Public
      A parser for the BED format including autoSql support
      TypeScript
      0511Updated Mar 28, 2026Mar 28, 2026
    • add AbortController support to a cache of async requests
      TypeScript
      MIT License
      1615Updated Mar 28, 2026Mar 28, 2026
    • Nodejs filehandle for reading bgzip+.gzi compressed files
      TypeScript
      MIT License
      4742Updated Mar 28, 2026Mar 28, 2026
    • bam-js

      Public
      Parse BAM and BAM index files in javascript for node and the browser
      TypeScript
      MIT License
      92571Updated Mar 28, 2026Mar 28, 2026
    • A D3 renderer for gene and variant features
      TypeScript
      1020Updated Mar 27, 2026Mar 27, 2026
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