fix: per-sample MultiQC progressive closure via structural .join chain#1803

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pinin4fjords wants to merge 7 commits intodevfrom

multiqc-per-sample-join

Commits on Apr 18, 2026

feat(bam_dedup_umi): expose genome-only stats/flagstat/idxstats emits
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fix(mqc): per-sample MultiQC progressive closure under --skip_quantification_merge
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fix(mqc): anchor fail_* streams on ch_fastq rather than ch_trim_read_count
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fix(mqc): anchor fail_* streams on the bundle seed, covering bam-branch samples
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refactor(mqc): derive fail_* anchor from the bundle itself

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claude
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refactor(mqc): tighten comments and hoist merged-mode channel into its branch

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claude
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Commits on Apr 19, 2026

docs: note manifest-only versions in per-sample MultiQC mode

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