Prompted by pathogen/files: Add TB intermediate files
The workflow would need to upload these intermediate inputs for the filter rule to S3:
|
rule filter: |
|
input: |
|
seq = "results/all_informative.vcf.gz", |
|
meta = "results/metadata.tsv", |
These can then be surfaced on https://nextstrain.org/pathogens/files and can also serve as starting points for external users that might not want to run the full workflow.
Prompted by pathogen/files: Add TB intermediate files
The workflow would need to upload these intermediate inputs for the
filterrule to S3:tb/Snakefile
Lines 429 to 432 in 2d90dd8
These can then be surfaced on https://nextstrain.org/pathogens/files and can also serve as starting points for external users that might not want to run the full workflow.