v2.5.0

• Add support for PCS110

Minor release

Following minor additions:

• Reporting the number of input reads failing mean base quality filtering (and optionally saving them to fastq).
• Reporting the number of output fragments failing minimum length filtering (and optionally saving them to fastq).
• Filter out reads with invalid quality strings.
• Saving the counts for all primer configurations to the stats TSV.
• Reporting potential artefactual primer configurations.
• Checking for sufficient hmmer version.

Patch release

Updated terminology of read classification.

Minor release

• Rescued reads are now only written to the file specified by -w .
• Added flags to filter input reads by mean Q value (-Q 7 by default) and output reads by length (minimum -z 50 by default).
• Changed the optimality criterion for parameter optimization to the number of usable bases instead of the number of reads.
• Updated evaluation results.

Patch release

• Fixing the lack of full read id in the per-read output.

Patch release

• Per-read output now includes full read header.

Patch release

• Updated per-read report.

Minor release

• Added per-read information written through the -D flag.

Patch release

• Added seaborn as a dependency.

Patch release

v2.0.2

Bump version: 2.0.1 → 2.0.2