v0.5.0

Change Log

Changed

• Dropped python3.8 support
• Switched package manager poetry to rye

Fixed

• Fixed consensus sequence extraction code to suppress biopython deprecated warning message

v0.4.2

Change Log

Bug Fix

• Fixed bug due to matplotlib v3.8.0 changes (link)

v0.4.1

Change Log

Improvement

• Added --label_type option to CLI
• Fixed mv.savefig() to suppress memory leak during multiple plots
• Changed linter flake8 to ruff
• Changed set_layout_engine() to tight_layout() for matplotlib backward compatibility (#7)

v0.4.0

Change Log

Improvement

• Added label_type option to show full description label (#6)
• Changed to set default color when set_custom_color_func() return value is set to None.

Bug Fix

• Fixed duplicate name error in case sorting msa (#6)

v0.3.0...v0.4.0

v0.3.0

Change Log

Improvement

• Added set_custom_color_func() method
• Removed upper bound version constraint in dependencies

v0.2.2...v0.3.0

v0.2.2

Change Log

Minor Change

• Drop python3.7 support
• Add ticks_interval=None option to disable ticks interval display

Bug Fix

• Fix MSA load functionality from URL

v0.2.1...v0.2.2

v0.2.1

Change Log

Minor Change

• Added new color scheme Identity (#2)
• Added x_unit_size control logic in set_plot_params() method
• Changed y_unit_size control logic in set_plot_params() method

v0.2.0

Change Log

New Functionality

• Added MSA order sort option based on NJ tree constructed from MSA distance matrix
• Added set_plot_params() method to adjust figure appearence in detail

Bug Fix

• Fixed grid missing bug in edge of MSA
• Fixed unexpected white grid display bug

v0.1.0

First Release

pyMSAviz is MSA(Multiple Sequence Alignment) visualization python package for sequence analysis.