README

WIPP-mask-labeling-plugin

Assigns unique labels to contiguous sets of pixels in binary images (masks). The output images are tiled TIFFs.

Docker distribution

This plugin is available on DockerHub from the WIPP organization

docker pull wipp/wipp-mask-labeling-plugin

Running the Docker container

docker run \
    -v "path/to/input/data/folder":/data/inputs \
    -v "path/to/output/folder":/data/outputs \
    wipp-image-mask-labeling-plugin \
    --inputImages /data/inputs/"inputCollectionTiledFolder"  
    --output /data/outputs
    --connectedness FOUR_CONNECTED