Bioinformatics Scientist and Full-Stack Developer building scalable genomics workflows and web applications for clinical and research settings.

• Terra.bio / Verily Workbench Genomics Workflows: Production-grade WDL workflows for large-scale genomics analysis in cloud-based trusted research environments.

  • Tech Stack: WDL Google Cloud Platform (GCP) Docker | Visit Dockstore

• nf-rna-wasp-allele-count: Genotype-aware RNA-seq pipeline using STAR+WASP for allele-specific read counting and variant allele fraction estimation.

  • Tech Stack: Nextflow Docker | Code

• nf-ont-methpro: Haplotype-resolved DNA methylation profiling pipeline for Oxford Nanopore (ONT) long-read sequencing.

  • Tech Stack: Nextflow Docker | Code

• nanomethylpredict: Predict DNA methylation from ONT sequencing data without native methylation calls.

  • Tech Stack: Nextflow Docker | Code

• ARA (Automated Record Analysis): An automatic pipeline for exploration of SRA datasets with sequences as a query.

  • Tech Stack: Perl Docker | Code

• COVID-19 Tracker: Real-time tracking of COVID-19 cases across the globe.

  • Tech Stack: Python Django HighchartsJS | Code | Demo

• React Dictionary App: A lightweight React app for multi-language definitions and pronunciation using a public dictionary API.

  • Tech Stack: ReactJS | Code | Demo

• Netflix UI clone: A responsive UI using data from themoviedb API.

  • Tech Stack: ReactJS | Code | Demo

• gene-to-protein-domains: Fetches protein domain positions & transcript info via UniProt/Ensembl APIs.

  • Tech Stack: Python | Code

• gauchian-enrich: A variant annotator for GBA variants called by Illumina Gauchian tool.

  • Tech Stack: Perl Docker Make | Code

• Variant Liftover: A tool for performing liftover of SNVs and InDels from hg19 to hg38, using CHR, POS, REF, and ALT (tsv) as input.

  • Tech Stack:Make Python Docker| Code

• SRA Annotator: A command-line tool for retrieving annotations from the NCBI SRA.

  • Tech Stack: Python | Code

• Get Bam Depth: A command-line tool to generate customized depth of coverage reports from BAM/CRAM files.

  • Tech Stack:Perl | Code

• Languages: Perl Bash Python JavaScript R MySQL

• Workflow Management: Nextflow GNU Make GNU Parallel WDL

• Web Development: React Django RShiny Bootstrap jQuery Axios Django REST Framework Perl CGI Highcharts D3.js Plotly

• Version Control: Git Subversion

• Containerization & Package Management: Docker Conda Bioconda Mamba pip

• Backend as a Service (BaaS): Render Heroku Firebase

• CI/CD: Jenkins GitHub Actions

• Project Management: Redmine GitHub Projects