Parallel read-in for HOPR hdf5 meshes (after partitioning)#24
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Parallel read-in for HOPR hdf5 meshes (after partitioning)#24
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Replaces serial HDF5 installation with parallel HDF5 (OpenMPI) for gfortran builds in CI. Also updates OpenMPI installation commands and improves step naming for clarity.
This reverts commit fbb5f25. Conflicts: .github/workflows/CI_parallel_NS.yml
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@amrueda, check with @oscarmarino but I do not think horses mpi compiles in debug mode. It has to do with the colouring class that no one is currently using. |
This reverts commit d4ee9e5.
…does not have that many slots available
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loganoz
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ok to merge, as discussed in the previous horses meeting
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This is step 2/3 of improving the pre-processing of HOPR hdf5 meshes in parallel.
ConstructMeshPartition_FromHDF5File_()for space-filling curve (SFC) partitioning (it requirespartitioning = SFCin the control file). This reduces the allocation burden and speeds up the mesh reading, as each rank will only read the mesh data that it requires (which is stored contiguously in the mesh file). However, a serial read-in of the mesh is still necessary for partitioning. Here, we also fix the initialization and finalization of hdf5 within horses and add tests for parallel read-in.