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Merged
aosakwe merged 3 commits into from
Mar 31, 2026
Merged

[feat] Added README badges #4

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b9b89c5
[feat] Added README badges
aosakwe Mar 31, 2026
5e238df
Rename workflow from 'SpaTM Install' to 'Install'
aosakwe Mar 31, 2026
acb3291
Rename workflow from 'SpaTM Tests' to 'Tests'
aosakwe Mar 31, 2026
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2 changes: 1 addition & 1 deletion .github/workflows/spatm_install.yml
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name: SpaTM Install
name: Install

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2 changes: 1 addition & 1 deletion .github/workflows/spatm_test.yml
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name: SpaTM Tests
name: Tests

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4 changes: 4 additions & 0 deletions README.md
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# A Spatial Topic Model (SpaTM) for Inferring Spatially Informed Transcriptional Programs
[![Manuscript](https://img.shields.io/badge/DOI-10.1093%2Fbib%2Fbbaf657-blue)](https://doi.org/10.1093/bib/bbaf657)
[![Install](https://github.com/li-lab-mcgill/SpaTM/actions/workflows/spatm_install.yml/badge.svg)](https://github.com/li-lab-mcgill/SpaTM/actions/workflows/spatm_install.yml)
[![Tests](https://github.com/li-lab-mcgill/SpaTM/actions/workflows/spatm_test.yml/badge.svg)](https://github.com/li-lab-mcgill/SpaTM/actions/workflows/spatm_test.yml)


This repository contains the R package for the Spatial Topic Model we have developed for flexible and interpretable analysis of spatial transcriptomics data. The method integrates multiple topic modelling frameworks to enable:

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