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Codex CLI Spec — justanatomy

Repo: git@github.com:kafkasl/justanatomy.git

API contract (must not break)

from justanatomy import Atlas
atlas = Atlas()

atlas.ensure_downloaded()
atlas.ensure_index()

atlas.parts()
atlas.get("FMA24474")
atlas.search("femur", k=5)

atlas.show_image("FMA24474", size=512)
atlas.show_mesh("FMA24474", opacity=1.0)

Default dataset source

Downloader should fetch (unless overridden):

Upstream structure:

  • stl/ contains FMA.stl
  • png/ contains FMA.png (if present)
  • FMA_ID_label_obj.csv includes FMAID + preferredName

The upstream repo documents this layout. (See README notes.)

Codex tasks (next)

  1. Add checksum and caching improvements to downloader.
  2. Add richer synonyms and (optional) kind classification.
  3. Add tests and CI.
  4. Optional: private Atlas._resolve_llm(...) (not public).