Hello, can you help me make sense of this error? I am trying to get the gene regions from Homo.sapiens but I am having trouble with it dropping genes and can't find a way around it. Thanks!
regions <- genes(Homo.sapiens,columns=c("SYMBOL","GENEID"))
1655 genes were dropped because they have exons located on both strands of the same
reference sequence or on more than one reference sequence, so cannot be represented by a
single genomic range.
Use 'single.strand.genes.only=FALSE' to get all the genes in a GRangesList object, or
use suppressMessages() to suppress this message.
'select()' returned 1:1 mapping between keys and columns
regions <- genes(Homo.sapiens,columns=c("SYMBOL","GENEID"),single.strand.genes.only=FALSE)
Error in .local(x, ...) :
unused argument (single.strand.genes.only = FALSE)
Hello, can you help me make sense of this error? I am trying to get the gene regions from Homo.sapiens but I am having trouble with it dropping genes and can't find a way around it. Thanks!