jbloomlab
Jesse Bloom's lab GitHub account
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Showing 10 of 152 repositories
- tree-annotated-plot Public
Annotate the axis of an Altair / Vega-Lite plot with a phylogenetic tree.
- flu-seqneut-2026 Public
Near real-time data on the human neutralizing antibody landscape to influenza virus as of the summer of 2026 to inform vaccine-strain selection
- SARS2-mut-fitness Public
Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates
- nextstrain-prot-titers-tree Public
Build interactive `nextstrain` trees on protein sequences designed to display neutralization titer values
- flu-seqneut-2025to2026 Public
Near real-time data on the human neutralizing antibody landscape to influenza virus as of early 2026 to inform vaccine-strain selection
- flu-ha-mhcii-usage-trees Public
Phylogenetic trees of influenza hemagglutinin annotated by MHC II binding
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