Skip to content
@flatironinstitute

Flatiron Institute

Popular repositories Loading

  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 706 394

  2. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 393 97

  3. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 343 87

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 258 150

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 153 97

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 134 23

Repositories

Showing 10 of 219 repositories
  • finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    flatironinstitute/finufft’s past year of commit activity
    C++ 393 97 48 (3 issues need help) 3 Updated Jan 5, 2026
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos’s past year of commit activity
    Python 116 MIT 14 131 (1 issue needs help) 11 Updated Jan 5, 2026
  • walnuts Public

    Within-orbit Adaptive Leapfrog No-U-Turn Sampler

    flatironinstitute/walnuts’s past year of commit activity
    C++ 35 MIT 1 10 (1 issue needs help) 2 Updated Jan 4, 2026
  • jaxmg Public

    jaxmg: A distributed linear solver in JAX with cuSolverMg

    flatironinstitute/jaxmg’s past year of commit activity
    Jupyter Notebook 15 Apache-2.0 1 0 0 Updated Jan 3, 2026
  • cryojax-ensemble-optimization Public
    flatironinstitute/cryojax-ensemble-optimization’s past year of commit activity
    Python 2 MIT 1 7 0 Updated Jan 2, 2026
  • disBatch Public

    Dynamic dispatch of a list of command-line tasks, locally or on a cluster. Supports retrying failed tasks, and adding/removing compute resources on-the-fly.

    flatironinstitute/disBatch’s past year of commit activity
    Python 46 Apache-2.0 9 7 0 Updated Jan 2, 2026
  • cephdu Public

    A ncdu-like TUI for the Ceph File System, using xattrs instead of crawling

    flatironinstitute/cephdu’s past year of commit activity
    Rust 2 MIT 0 15 0 Updated Jan 1, 2026
  • jax-finufft Public

    JAX bindings to the Flatiron Institute Non-uniform Fast Fourier Transform (FINUFFT) library

    flatironinstitute/jax-finufft’s past year of commit activity
    C++ 109 Apache-2.0 10 9 2 Updated Jan 1, 2026
  • nifty-ls Public

    A fast Lomb-Scargle periodogram. It's nifty, and uses a NUFFT!

    flatironinstitute/nifty-ls’s past year of commit activity
    Python 45 Apache-2.0 5 5 0 Updated Jan 1, 2026
  • masala_public Public

    The public repository for the Core library of the Masala software suite. Masala is a set of free and open-source tools for biomolecular modelling, with a plugin-based infrastructure that makes it easy to extend other software.

    flatironinstitute/masala_public’s past year of commit activity
    C++ 8 AGPL-3.0 1 0 0 Updated Jan 1, 2026
View all repositories

Top languages

Loading…