singleCellTK release v2.18.0

Changes in Version 2.18.0 (2025-04-15)

• Updated call to msigdbr to work with newer version
• Updated version to match Bioconductor 3.21
• Fixed reproducibility with scDblFinder

Changes in Version 2.16.1 (2024-02-12)

• Fixed decontX/soupX webapp error
• Fixed error in reportCellQC
• Fixed additional bugs with Seurat V5 integration

Changes in Version 2.16.0 (2024-10-29)

• Updated version to match Bioconductor 3.20

singleCellTK release v2.14.0

• Updated version to match Bioconductor 3.19
• Update runGSVA function to work with newer GSVA package

singleCellTK release v2.12.2

• Added support for Seurat V5

singleCellTK release v2.12.1

• Updates to documentation
• Fixes to runTSCAN and plotSeurat Genes
• Added support for flat file import into SCTK-QC
• Fixed directory issue in importCellRanger
• Added Bubble plot to Shiny GUI
• Updated Dockerfile

singleCellTK release v2.12.0

• Updated version to match Bioconductor 3.18

singleCellTK release v2.10.1

• Added function for bubble plot
• In SCTK-QC pipeline, added support for batch processing multiple inputs
• In SCTK-QC pipeline, added support for importing and exporting AnnData objects
• In SCTK-QC pipeline, fixed a bug causing YAML output files to be empty
• Update the SCTK-QC tutorial
• Fixed bug in combineSCE causing it to create multiple copies of row or column data

singleCellTK release v2.10.0

• Updated version to match Bioconductor 3.17

singleCellTK release v2.8.1

• Added scanpy wrapper functions for use from console
• Added scanpy UI curated workflow
• Integrated scanpy to a la carte workflow
• Fixed a bug in importing fluidigm dataset
• Updated downloading features in the Shiny app
• Added error checking around Enrichr functions
• Minor tweaks to plot defaults

singleCellTK release v2.8.0

• Updated version to match Bioconductor version

singleCellTK release v2.7.3

• Fixed bugs related to dependency updates