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Cleanup: Remove dead code, commented-out code, and stale TODOs

Status: Open.

#149 In cmkobel/CompareM2;

· cmkobel opened on Mar 13, 2026

Refactor: Simplify chained DataFrame filters in present_status()

Status: Open.

#148 In cmkobel/CompareM2;

· cmkobel opened on Mar 13, 2026

Cleanup: Deduplicate tip strings in launcher tip_exit()

Status: Open.

#147 In cmkobel/CompareM2;

· cmkobel opened on Mar 13, 2026

Refactor: Make generate_final_output() data-driven

Status: Open.

#146 In cmkobel/CompareM2;

· cmkobel opened on Mar 13, 2026

Refactor: Deduplicate pseudo target rules (fast/meta/isolate)

Status: Open.

#145 In cmkobel/CompareM2;

· cmkobel opened on Mar 13, 2026

Cleanup: Remove unused imports in Snakefile

Status: Open.

#144 In cmkobel/CompareM2;

· cmkobel opened on Mar 13, 2026

Cleanup: Remove unused version_major and version_patch variables

Status: Open.

#143 In cmkobel/CompareM2;

· cmkobel opened on Mar 13, 2026

Refactor: Deduplicate download rules in downloads.smk

Status: Open.

#140 In cmkobel/CompareM2;

· cmkobel opened on Mar 13, 2026

Refactor: Extract software version collection boilerplate into shared function

Status: Open.

#139 In cmkobel/CompareM2;

· cmkobel opened on Mar 13, 2026

Prefer pixi over conda

Status: Open.

#138 In cmkobel/CompareM2;

· cmkobel opened on Mar 13, 2026

Macos support?

Status: Open.

#137 In cmkobel/CompareM2;

· cmkobel opened on Mar 13, 2026

Error in mutate() and sort.int()

Status: Open.

#135 In cmkobel/CompareM2;

· sjparkmk opened on Sep 18, 2025