0.3.4

Add grep -w for specific REF_ID

What's Changed

• updated grep bug by @JalealCDC in #9

New Contributors

• @JalealCDC made their first contribution in #9

Full Changelog: 0.3.3...0.3.4

0.3.3

Add amplicon range hover information

0.3.2

• Add --count_primer option to count overlapped primer region to unique coverage

0.3.1

• apply RefID on gff file parsing.
• fix off by one coverage calculation
• fix bug on gff parsing

0.3.0

• add --gff option for providing annotation hover info
• add bed6/bedpe format link and simple format check
• adjust hover text information

0.2.1

• Make depth lines configurable on the command line by @pvanheus (pull request #2)
• Update test case result

0.2.0

• merge feature addition to add number of ambiguous calculation and additional trace line on final plot by @lskatz. (pull request #1 )
• fix bug: unique region parsing from bed/bedpe file. It was missing the first and last region and error when there is fully covered amplicon by another amplicon.
• expose the min coverage as parameter to let user define the ambigous N and default to 10
• fix bug: the interatcive plot with new added trace to show number of ambiguous.

0.1.3

• color black for < 5x and blue for <20x
• add bam input required sort by coordinate

0.1.2

1. Add counting of reads, proper paired reads. until_eof=True for not index bam file
2. Fix bug on input bam file.
3. Add --pp for process proper-pair only bam file
4. Add test bam and bedpe file
5. Add tick mark

0.1.1

Update README.md