chore: update 'stack' helm chart version for cryoet-apiv2 rdev#582
Merged
chore: update 'stack' helm chart version for cryoet-apiv2 rdev#582
Conversation
czi-github-helper
bot
force-pushed
the
updatecli-bump-stack-chart-cryoet-apiv2-rdev
branch
3 times, most recently
from
4c52815 to
7d2c0c6
Compare
czi-github-helper
bot
force-pushed
the
updatecli-bump-stack-chart-cryoet-apiv2-rdev
branch
3 times, most recently
from
9db9e4c to
96dd890
Compare
czi-github-helper
bot
force-pushed
the
updatecli-bump-stack-chart-cryoet-apiv2-rdev
branch
from
96dd890 to
2f90f5f
Compare
czi-github-helper
bot
force-pushed
the
updatecli-bump-stack-chart-cryoet-apiv2-rdev
branch
2 times, most recently
from
dc13c64 to
051ec65
Compare
czi-github-helper
bot
force-pushed
the
updatecli-bump-stack-chart-cryoet-apiv2-rdev
branch
3 times, most recently
from
58e897a to
7436309
Compare
czi-github-helper
bot
force-pushed
the
updatecli-bump-stack-chart-cryoet-apiv2-rdev
branch
from
7436309 to
7c24b74
Compare
uermel
approved these changes
Mar 7, 2026
PALLAVIKHEDLE
pushed a commit
that referenced
this pull request
Mar 7, 2026
update 'stack' helm chart version Co-authored-by: hspitzley-czi <105455169+hspitzley-czi@users.noreply.github.com>
PALLAVIKHEDLE
added a commit
that referenced
this pull request
Mar 9, 2026
* feat: use annotation_ingest_id for uniqueness hash key in s3 + db * feat: add instance segmentation mask support (#602) * feat: Add support/config for InstanceSegmentationMask * chore: Add new generated code from the new config for InstanceSegmentationMask * feat: add instance segmentation mask class and instance creation * chore: remove debug/test code in configuration 10441.yaml * feat: remove the instancesegmentation mask from v1, and enhance it for v2 * feat: add first steps for the InstanceSegmentationMask ingestion * fix: remove bad guard and simplify it * feat: add dedicated shape for the InstanceSegmentationMask * fix: remove labels param to convert function of instance seg masks this was causing all data to be one singular label * feat: allow passing seg list into gen and v1 of instance seg mask config * feat: Add configuration generation for InstanceSegmentationMask * feat: Remove mask_label for InstanceSegmentationMask * feat: add label computation and storing before configuration generation * feat: clean schema attribute for the InstanceSegmentationMask * feat: add tests for the instance segmentation mask * chore: Updating schema to add InstanceSegmentationMask * fix: change is_a property of InstanceSegmentationMask in metadata.yaml * chore: update portal-neuroglancer to v1.7.0 * feat: change metadata storing for labels in image-label * feat: add tests for instance segmentation mask db ingestion * feat: add a different method for downscaling multi-label segmentation masks * chore: Add back missing migration script * chore: Update schema to add InstanceSegmentationMask shape * chore: Fix comment and poetry version * feat: change the container for the image-label metadata * chore: apply old formatter for the migration * chore: remove InstanceSegmentationMask from v1 schema * chore: remove lefovers for v1 for InstanceSegmenationMask * chore: add back AnnotationInstanceSegmentationFile in metadata.yaml for v1.1.0 * bugfix a merge conflict * small fixes * fix instance seg mask downsampling; other small fixes; add instancesegmentationmask to ingestion config * add instance segmentation mask validation tests * fix test * chore: Updated [rdev] values.yaml image tags to sha-d8cd1e8 * ingestion fixes * chore: Updated [rdev] values.yaml image tags to sha-03852f4 * add object count to instance seg mask * chore: Updated [rdev] values.yaml image tags to sha-e7e0d72 * add is_valid check to instancesegmask * fix alembic migration versions * reorder migrations correctly. --------- Co-authored-by: aranega <vincent.aranega@gmail.com> Co-authored-by: Sean Martin <martins7@tcd.ie> Co-authored-by: czi-github-helper[bot] <+czi-github-helper[bot]@users.noreply.github.com> Co-authored-by: uermel <uermel@czii.org> * fix: Bring ingestion config and S3 metadata content back into alignment for deposition 10314 (#610) bring config and metadata content back into alignment. * chore: update 'stack' helm chart version for cryoet-apiv2 rdev (#582) update 'stack' helm chart version Co-authored-by: hspitzley-czi <105455169+hspitzley-czi@users.noreply.github.com> * chore: update 'stack' helm chart version for cryoet-apiv2 staging (#581) update 'stack' helm chart version Co-authored-by: hspitzley-czi <105455169+hspitzley-czi@users.noreply.github.com> * feat: add schema migration for annotation_ingest_id * fix: add annotation_ingest_id to db_import test fixtures * fix: add annotation_ingest_id to db_import test fixtures and update expected file_size --------- Co-authored-by: Daniel Ji <daji@ucsd.edu> Co-authored-by: aranega <vincent.aranega@gmail.com> Co-authored-by: Sean Martin <martins7@tcd.ie> Co-authored-by: czi-github-helper[bot] <+czi-github-helper[bot]@users.noreply.github.com> Co-authored-by: uermel <uermel@czii.org> Co-authored-by: Utz Ermel <uermel@users.noreply.github.com> Co-authored-by: czi-github-helper[bot] <95879977+czi-github-helper[bot]@users.noreply.github.com> Co-authored-by: hspitzley-czi <105455169+hspitzley-czi@users.noreply.github.com>
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Uh oh!
There was an error while loading. Please reload this page.