viral-references

Reference genomes for viral genomics

Accessing the Data

This repository is automatically deployed to Google Cloud Storage for public access.

Latest Version (main branch)

gs://viral-references/main/assembly/reference_genomes.tsv
gs://viral-references/main/annotation/vadr/vadr-by-taxid.tsv
gs://viral-references/main/typing/nextclade-by-taxid.tsv
gs://viral-references/main/submission/table2asn-prohibited.tsv

Versioned Releases

Pinned versions are available for reproducible workflows:

gs://viral-references/1.0.0/assembly/reference_genomes.tsv
gs://viral-references/1.0.1/assembly/reference_genomes.tsv

Deployment

Data is automatically deployed via GitHub Actions:

• Every push to main updates gs://viral-references/main/
• Any tag (e.g., 1.0.0, 1.0.1) creates an immutable snapshot at gs://viral-references/{tag}/