BridgeDb 3.0.30

This release updates to BridgeDb Datasources 20260105 adding a few hundred more species and updates various dependencies and Maven plugins.

Full Changelog: release_3.0.29...release_3.0.30

The below examples assume you need just org.bridgedb.bio, and you can use it as template and modify to add other modules.

For Maven:

<dependencies>
    <dependency>
        <groupId>org.bridgedb</groupId>
        <artifactId>org.bridgedb.bio</artifactId>
        <version>3.0.30</version>
    </dependency>
</dependencies>

For Gradle:

compile group: 'org.bridgedb', name: 'org.bridgedb.bio', version: '3.0.30'

For Ivy:

<dependency org="org.bridgedb" name="org.bridgedb.bio" rev="3.0.30"/>

For Buildr:

'org.bridgedb:org.bridgedb.bio:jar:3.0.30'

BridgeDb 3.0.29

This update release brings in BridgeDb Datasources 20270728, improves the backwards compatibility with old Apache Derby versions, adds a BridgeDb.getVersion() method, and updates various dependencies.

Full Changelog: release_3.0.28...release_3.0.29

The below examples assume you need just org.bridgedb.bio, and you can use it as template and modify to add other modules.

For Maven:

<dependencies>
    <dependency>
        <groupId>org.bridgedb</groupId>
        <artifactId>org.bridgedb.bio</artifactId>
        <version>3.0.29</version>
    </dependency>
</dependencies>

For Gradle:

compile group: 'org.bridgedb', name: 'org.bridgedb.bio', version: '3.0.29'

For Ivy:

<dependency org="org.bridgedb" name="org.bridgedb.bio" rev="3.0.29"/>

For Buildr:

'org.bridgedb:org.bridgedb.bio:jar:3.0.29'

BridgeDb 3.1.4

Minor update to BridgeDb Java 3.1.3, fixing some Java 8 issues.

BridgeDb 3.0.28

This update release brings in BridgeDb Datasources 20240925, a new organism (Rosmarinus officinalis), and various dependency updates, including an update of the MySQL driver.

Full Changelog: release_3.0.27...release_3.0.28

The below examples assume you need just org.bridgedb.bio, and you can use it as template and modify to add other modules.

For Maven:

<dependencies>
    <dependency>
        <groupId>org.bridgedb</groupId>
        <artifactId>org.bridgedb.bio</artifactId>
        <version>3.0.28</version>
    </dependency>
</dependencies>

For Gradle:

compile group: 'org.bridgedb', name: 'org.bridgedb.bio', version: '3.0.28'

For Ivy:

<dependency org="org.bridgedb" name="org.bridgedb.bio" rev="3.0.28"/>

For Buildr:

'org.bridgedb:org.bridgedb.bio:jar:3.0.28'

BridgeDb 3.1.2 (Java 8)

This release is a Java8-compatible version of BridgeDb 3.1.2.

BridgeDb 3.1.2

This update release brings in BridgeDb Datasources 20240725, a new organism (Solanum tuberosum), and various small stability improvements. It includes the fix for the instantiation of Ensembl identifiers from their Bioregistry compact identifiers.

Full Changelog: release_3.1.1...release_3.1.2

BridgeDb 3.0.27

This update release brings in BridgeDb Datasources 20240725, a new organism (Solanum tuberosum), and various small stability improvements.

The below examples assume you need just org.bridgedb.bio, and you can use it as template and modify to add other modules.

For Maven:

<dependencies>
    <dependency>
        <groupId>org.bridgedb</groupId>
        <artifactId>org.bridgedb.bio</artifactId>
        <version>3.0.27</version>
    </dependency>
</dependencies>

For Gradle:

compile group: 'org.bridgedb', name: 'org.bridgedb.bio', version: '3.0.27'

For Ivy:

<dependency org="org.bridgedb" name="org.bridgedb.bio" rev="3.0.27"/>

For Buildr:

'org.bridgedb:org.bridgedb.bio:jar:3.0.27'

BridgeDb 3.0.26

Minor release fixing the instantiation of Ensembl identifiers from their Bioregistry compact identifiers.

BridgeDb 3.1.1

Update release for the BridgeDb 3.1 series. It brings in the changes in the 3.0.24 and 3.0.25 releases.

Full Changelog: release_3.1.0...release_3.1.1

BridgeDb 3.0.25

Major release with important API change: the upgrade to RDF4J 4 required some BridgeDb Java APIs in the RDF modules to change from URI to IRI. Also updates to BridgeDb Datasources 20231202 and dependency updates for slf4j and JUnit.

The below examples assume you need just org.bridgedb.bio, and you can use it as template and modify to add other modules.

For Maven:

<dependencies>
    <dependency>
        <groupId>org.bridgedb</groupId>
        <artifactId>org.bridgedb.bio</artifactId>
        <version>3.0.25</version>
    </dependency>
</dependencies>

For Gradle:

compile group: 'org.bridgedb', name: 'org.bridgedb.bio', version: '3.0.25'

For Ivy:

<dependency org="org.bridgedb" name="org.bridgedb.bio" rev="3.0.25"/>

For Buildr:

'org.bridgedb:org.bridgedb.bio:jar:3.0.25'

Full Changelog: release_3.0.24...release_3.0.25