Name		Name	Last commit message	Last commit date
.Rhistory		.Rhistory
.gitattributes		.gitattributes
README.md		README.md
alignResults.BAM		alignResults.BAM
alignResults.BAM.indel.vcf		alignResults.BAM.indel.vcf
alignResults.BAM.summary		alignResults.BAM.summary
alignResultsPE.BAM		alignResultsPE.BAM
alignResultsPE.BAM.indel.vcf		alignResultsPE.BAM.indel.vcf
alignResultsPE.BAM.summary		alignResultsPE.BAM.summary
ensgene		ensgene
featCounts_genes.txt		featCounts_genes.txt
reference_index.00.b.array		reference_index.00.b.array
reference_index.files		reference_index.files
reference_index.log		reference_index.log
reference_index.reads		reference_index.reads
results.csv		results.csv
rsubread.R		rsubread.R

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RSubRead_Deseq2

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A short guide on how to extract DEGs (differential expressed genes) from Fastq file using a combination of Rsubred and Deseq2

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