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Achievement: Pull Sharkx3Achievement: Pair ExtraordinaireAchievement: YOLOAchievement: StarstruckAchievement: Quickdraw

Achievements

Achievement: Pull Sharkx3Achievement: Pair ExtraordinaireAchievement: YOLOAchievement: StarstruckAchievement: Quickdraw

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@tucca-cellag

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benjibromberg/README.md

Hi, I'm Benji Bromberg

Research Technician at the Tufts University Center for Cellular Agriculture (Kaplan Lab). MS in Computer Science from Tufts University (machine learning, computer vision, and computational biology), BS in Biochemistry and Molecular Biology from Lewis & Clark College.

I started my work in the wet lab (primarily cell line development for fish, crusteceans, and avians), but I've transitioned into computational biology and bioinformatics. Now I build pipelines and tools to support the lab's computational research. I also founded our lab's GitHub organization to centralize our computational projects. I now lead the lab's work at the intersection of cellular agriculture and AI, and I maintain and drive the ongoing development of CAAIL, the Cellular Agriculture AI Library (browse it) — a curated, open catalogue of papers, datasets, software, and databases at that intersection.

Currently working on:

Side projects:

ORCID | bromberg.benji@gmail.com

Pinned Loading

  1. tucca-cellag/caail tucca-cellag/caail Public

    CAAIL (Cellular Agriculture AI Library), is a curated, open-source collection of resources dedicated to the intersection of Cellular Agriculture and AI

    TypeScript 2

  2. zotero-context zotero-context Public

    Project-scoped Zotero references for Claude Code — auto-triggering skill, vendored scripts, no MCP server. For surfacing curated literature while you code.

    Python 1

  3. claude-code-customizations claude-code-customizations Public

    Hooks and rules I use with Claude Code, including a PreToolUse Bash hook that catches diagnostic-output anti-patterns (pipe-to-head/tail/grep, 2>/dev/null, || true) via a tripwire + LLM disambiguat…

    Shell 1

  4. claude-nfcore-docs claude-nfcore-docs Public

    Claude Code skill for loading nf-core documentation and specifications into context. Compliance checking, spec-driven development, and audit support for nf-core pipeline projects.

    Python 2

  5. survivor-fantasy survivor-fantasy Public

    Survivor fantasy league webapp. Snake draft, configurable scoring, win probability simulations. Flask, SQLAlchemy, Chart.js, Docker + Tailscale.

    Python 1

  6. tucca-cellag/tucca-rna-seq tucca-cellag/tucca-rna-seq Public

    TUCCA's RNA-Seq Workflow for Read Quantification, Differential Expression, and Pathway Enrichment Analysis

    R 19